miRNA display CGI


Results 1 - 20 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29014 5' -58.6 NC_006146.1 + 117879 0.66 0.855569
Target:  5'- gGCGGCCGcggCCAGCCGcGUgagGCccaGGGc -3'
miRNA:   3'- -CGCCGGUcaaGGUCGGUcCAa--CG---CCC- -5'
29014 5' -58.6 NC_006146.1 + 21953 0.66 0.855569
Target:  5'- aGCGGgUAGggaggcaaagaUUCCAGCCGagaaGUgGCGGGg -3'
miRNA:   3'- -CGCCgGUC-----------AAGGUCGGUc---CAaCGCCC- -5'
29014 5' -58.6 NC_006146.1 + 26789 0.66 0.855569
Target:  5'- uGCGGCgccaguacCAGUUCUAGCUuaGGcGUUG-GGGc -3'
miRNA:   3'- -CGCCG--------GUCAAGGUCGG--UC-CAACgCCC- -5'
29014 5' -58.6 NC_006146.1 + 142344 0.66 0.855569
Target:  5'- gGCaGGCCGGgca-GGCCGGGUcuUGGGc -3'
miRNA:   3'- -CG-CCGGUCaaggUCGGUCCAacGCCC- -5'
29014 5' -58.6 NC_006146.1 + 145422 0.66 0.855569
Target:  5'- gGCaGGCCGGgca-GGCCGGGUcuUGGGc -3'
miRNA:   3'- -CG-CCGGUCaaggUCGGUCCAacGCCC- -5'
29014 5' -58.6 NC_006146.1 + 148500 0.66 0.855569
Target:  5'- gGCaGGCCGGgca-GGCCGGGUcuUGGGc -3'
miRNA:   3'- -CG-CCGGUCaaggUCGGUCCAacGCCC- -5'
29014 5' -58.6 NC_006146.1 + 151578 0.66 0.855569
Target:  5'- gGCaGGCCGGgca-GGCCGGGUcuUGGGc -3'
miRNA:   3'- -CG-CCGGUCaaggUCGGUCCAacGCCC- -5'
29014 5' -58.6 NC_006146.1 + 154656 0.66 0.855569
Target:  5'- gGCaGGCCGGgca-GGCCGGGUcuUGGGc -3'
miRNA:   3'- -CG-CCGGUCaaggUCGGUCCAacGCCC- -5'
29014 5' -58.6 NC_006146.1 + 157733 0.66 0.855569
Target:  5'- gGCaGGCCGGgca-GGCCGGGUcuUGGGc -3'
miRNA:   3'- -CG-CCGGUCaaggUCGGUCCAacGCCC- -5'
29014 5' -58.6 NC_006146.1 + 162394 0.66 0.855569
Target:  5'- cGCGcCCGGgaCCccggugGGCCAGGaugGUGGGg -3'
miRNA:   3'- -CGCcGGUCaaGG------UCGGUCCaa-CGCCC- -5'
29014 5' -58.6 NC_006146.1 + 53493 0.66 0.847918
Target:  5'- -gGGCCGGgggugcggUCUGGCuCuGGcUGCGGGc -3'
miRNA:   3'- cgCCGGUCa-------AGGUCG-GuCCaACGCCC- -5'
29014 5' -58.6 NC_006146.1 + 150580 0.66 0.847918
Target:  5'- uGCuGGCCAucgUCCAGCacccgccugCAGGggaUGUGGGc -3'
miRNA:   3'- -CG-CCGGUca-AGGUCG---------GUCCa--ACGCCC- -5'
29014 5' -58.6 NC_006146.1 + 22108 0.66 0.840082
Target:  5'- gGUGGCUGGgca-GGCCGGGUcuCGGGu -3'
miRNA:   3'- -CGCCGGUCaaggUCGGUCCAacGCCC- -5'
29014 5' -58.6 NC_006146.1 + 19030 0.66 0.840082
Target:  5'- gGUGGCUGGgca-GGCCGGGUcuCGGGu -3'
miRNA:   3'- -CGCCGGUCaaggUCGGUCCAacGCCC- -5'
29014 5' -58.6 NC_006146.1 + 12875 0.66 0.840082
Target:  5'- gGUGGCUGGgca-GGCCGGGUcuCGGGu -3'
miRNA:   3'- -CGCCGGUCaaggUCGGUCCAacGCCC- -5'
29014 5' -58.6 NC_006146.1 + 28264 0.66 0.840082
Target:  5'- gGUGGCUGGgca-GGCCGGGUcuCGGGu -3'
miRNA:   3'- -CGCCGGUCaaggUCGGUCCAacGCCC- -5'
29014 5' -58.6 NC_006146.1 + 81386 0.66 0.840082
Target:  5'- aGCGGCCAuuuGggCCaaAGCCAaagagcuuuuGGgaaaUGCGGGc -3'
miRNA:   3'- -CGCCGGU---CaaGG--UCGGU----------CCa---ACGCCC- -5'
29014 5' -58.6 NC_006146.1 + 25186 0.66 0.840082
Target:  5'- gGUGGCUGGgca-GGCCGGGUcuCGGGu -3'
miRNA:   3'- -CGCCGGUCaaggUCGGUCCAacGCCC- -5'
29014 5' -58.6 NC_006146.1 + 168481 0.66 0.840082
Target:  5'- cCGGCCucacgUCCacGGUCGGGggGcCGGGg -3'
miRNA:   3'- cGCCGGuca--AGG--UCGGUCCaaC-GCCC- -5'
29014 5' -58.6 NC_006146.1 + 147063 0.66 0.839289
Target:  5'- -gGGCCAGgUCCcggcguagggaaaGGCCAGGgagagagaaGUGGGc -3'
miRNA:   3'- cgCCGGUCaAGG-------------UCGGUCCaa-------CGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.