miRNA display CGI


Results 1 - 20 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29015 3' -61.8 NC_006146.1 + 75696 0.66 0.746877
Target:  5'- gCCUC-CCuggaggagcUgCAGCGCagGGACCUGGc -3'
miRNA:   3'- gGGAGaGG---------AgGUCGCGggCCUGGACC- -5'
29015 3' -61.8 NC_006146.1 + 73585 0.66 0.746877
Target:  5'- aUCCUCUCCUCCGGUcgaGCUcaCGGGgCa-- -3'
miRNA:   3'- -GGGAGAGGAGGUCG---CGG--GCCUgGacc -5'
29015 3' -61.8 NC_006146.1 + 67295 0.66 0.746877
Target:  5'- -gCgagCUCCgCCAGCuCCCGGGCCa-- -3'
miRNA:   3'- ggGa--GAGGaGGUCGcGGGCCUGGacc -5'
29015 3' -61.8 NC_006146.1 + 159876 0.66 0.746877
Target:  5'- uCCCuggUCUCCUCgCAGaggGCCuCGaGGCCgGGg -3'
miRNA:   3'- -GGG---AGAGGAG-GUCg--CGG-GC-CUGGaCC- -5'
29015 3' -61.8 NC_006146.1 + 113610 0.66 0.746877
Target:  5'- gUCUCUCCgucgCCuGC-CCCGG-CgCUGGa -3'
miRNA:   3'- gGGAGAGGa---GGuCGcGGGCCuG-GACC- -5'
29015 3' -61.8 NC_006146.1 + 94310 0.66 0.737723
Target:  5'- aCCCUCUCCUCguccUGCUCGGuCCccacgGGg -3'
miRNA:   3'- -GGGAGAGGAGguc-GCGGGCCuGGa----CC- -5'
29015 3' -61.8 NC_006146.1 + 156711 0.66 0.736802
Target:  5'- gCCUCcCCgUCCAG-GCuCCGGggguccaGCCUGGc -3'
miRNA:   3'- gGGAGaGG-AGGUCgCG-GGCC-------UGGACC- -5'
29015 3' -61.8 NC_006146.1 + 142711 0.66 0.73496
Target:  5'- aCCCgUCUCUgUCCacuagaggggaccgGGUGUUgGGACCUGGu -3'
miRNA:   3'- -GGG-AGAGG-AGG--------------UCGCGGgCCUGGACC- -5'
29015 3' -61.8 NC_006146.1 + 150707 0.66 0.728486
Target:  5'- gCCCag-CCUCCuGCGCCCccggGGGCCc-- -3'
miRNA:   3'- -GGGagaGGAGGuCGCGGG----CCUGGacc -5'
29015 3' -61.8 NC_006146.1 + 44107 0.66 0.728486
Target:  5'- aCCUCcaggCC-CCGGCuGCCCGG-CgaGGa -3'
miRNA:   3'- gGGAGa---GGaGGUCG-CGGGCCuGgaCC- -5'
29015 3' -61.8 NC_006146.1 + 124118 0.66 0.728486
Target:  5'- gCCCUCgcgCCggccggCCAGCcauccGCCCGGGgUcGGg -3'
miRNA:   3'- -GGGAGa--GGa-----GGUCG-----CGGGCCUgGaCC- -5'
29015 3' -61.8 NC_006146.1 + 5164 0.66 0.72477
Target:  5'- gCCCUgcugaagUUCCUggCCAG-GCCCgagacguuuucccuGGGCCUGGg -3'
miRNA:   3'- -GGGA-------GAGGA--GGUCgCGGG--------------CCUGGACC- -5'
29015 3' -61.8 NC_006146.1 + 168011 0.66 0.719176
Target:  5'- gCCCUCUCCUCCucuaagaguGGUGUCgaCGGuCC-GGu -3'
miRNA:   3'- -GGGAGAGGAGG---------UCGCGG--GCCuGGaCC- -5'
29015 3' -61.8 NC_006146.1 + 29325 0.66 0.719176
Target:  5'- cCUCUCUcCCUCCccgaGGC-CCCGGcuCCUGa -3'
miRNA:   3'- -GGGAGA-GGAGG----UCGcGGGCCu-GGACc -5'
29015 3' -61.8 NC_006146.1 + 20091 0.66 0.719176
Target:  5'- cCUCUCUcCCUCCccgaGGC-CCCGGcuCCUGa -3'
miRNA:   3'- -GGGAGA-GGAGG----UCGcGGGCCu-GGACc -5'
29015 3' -61.8 NC_006146.1 + 17013 0.66 0.719176
Target:  5'- cCUCUCUcCCUCCccgaGGC-CCCGGcuCCUGa -3'
miRNA:   3'- -GGGAGA-GGAGG----UCGcGGGCCu-GGACc -5'
29015 3' -61.8 NC_006146.1 + 13936 0.66 0.719176
Target:  5'- cCUCUCUcCCUCCccgaGGC-CCCGGcuCCUGa -3'
miRNA:   3'- -GGGAGA-GGAGG----UCGcGGGCCu-GGACc -5'
29015 3' -61.8 NC_006146.1 + 60718 0.66 0.719176
Target:  5'- gCCgcaUCUCCaaCCGGCGCUgaGGcCCUGGa -3'
miRNA:   3'- -GGg--AGAGGa-GGUCGCGGg-CCuGGACC- -5'
29015 3' -61.8 NC_006146.1 + 26247 0.66 0.719176
Target:  5'- cCUCUCUcCCUCCccgaGGC-CCCGGcuCCUGa -3'
miRNA:   3'- -GGGAGA-GGAGG----UCGcGGGCCu-GGACc -5'
29015 3' -61.8 NC_006146.1 + 23169 0.66 0.719176
Target:  5'- cCUCUCUcCCUCCccgaGGC-CCCGGcuCCUGa -3'
miRNA:   3'- -GGGAGA-GGAGG----UCGcGGGCCu-GGACc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.