Results 1 - 20 of 145 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29015 | 3' | -61.8 | NC_006146.1 | + | 73585 | 0.66 | 0.746877 |
Target: 5'- aUCCUCUCCUCCGGUcgaGCUcaCGGGgCa-- -3' miRNA: 3'- -GGGAGAGGAGGUCG---CGG--GCCUgGacc -5' |
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29015 | 3' | -61.8 | NC_006146.1 | + | 75696 | 0.66 | 0.746877 |
Target: 5'- gCCUC-CCuggaggagcUgCAGCGCagGGACCUGGc -3' miRNA: 3'- gGGAGaGG---------AgGUCGCGggCCUGGACC- -5' |
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29015 | 3' | -61.8 | NC_006146.1 | + | 113610 | 0.66 | 0.746877 |
Target: 5'- gUCUCUCCgucgCCuGC-CCCGG-CgCUGGa -3' miRNA: 3'- gGGAGAGGa---GGuCGcGGGCCuG-GACC- -5' |
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29015 | 3' | -61.8 | NC_006146.1 | + | 159876 | 0.66 | 0.746877 |
Target: 5'- uCCCuggUCUCCUCgCAGaggGCCuCGaGGCCgGGg -3' miRNA: 3'- -GGG---AGAGGAG-GUCg--CGG-GC-CUGGaCC- -5' |
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29015 | 3' | -61.8 | NC_006146.1 | + | 67295 | 0.66 | 0.746877 |
Target: 5'- -gCgagCUCCgCCAGCuCCCGGGCCa-- -3' miRNA: 3'- ggGa--GAGGaGGUCGcGGGCCUGGacc -5' |
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29015 | 3' | -61.8 | NC_006146.1 | + | 94310 | 0.66 | 0.737723 |
Target: 5'- aCCCUCUCCUCguccUGCUCGGuCCccacgGGg -3' miRNA: 3'- -GGGAGAGGAGguc-GCGGGCCuGGa----CC- -5' |
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29015 | 3' | -61.8 | NC_006146.1 | + | 156711 | 0.66 | 0.736802 |
Target: 5'- gCCUCcCCgUCCAG-GCuCCGGggguccaGCCUGGc -3' miRNA: 3'- gGGAGaGG-AGGUCgCG-GGCC-------UGGACC- -5' |
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29015 | 3' | -61.8 | NC_006146.1 | + | 142711 | 0.66 | 0.73496 |
Target: 5'- aCCCgUCUCUgUCCacuagaggggaccgGGUGUUgGGACCUGGu -3' miRNA: 3'- -GGG-AGAGG-AGG--------------UCGCGGgCCUGGACC- -5' |
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29015 | 3' | -61.8 | NC_006146.1 | + | 44107 | 0.66 | 0.728486 |
Target: 5'- aCCUCcaggCC-CCGGCuGCCCGG-CgaGGa -3' miRNA: 3'- gGGAGa---GGaGGUCG-CGGGCCuGgaCC- -5' |
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29015 | 3' | -61.8 | NC_006146.1 | + | 124118 | 0.66 | 0.728486 |
Target: 5'- gCCCUCgcgCCggccggCCAGCcauccGCCCGGGgUcGGg -3' miRNA: 3'- -GGGAGa--GGa-----GGUCG-----CGGGCCUgGaCC- -5' |
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29015 | 3' | -61.8 | NC_006146.1 | + | 150707 | 0.66 | 0.728486 |
Target: 5'- gCCCag-CCUCCuGCGCCCccggGGGCCc-- -3' miRNA: 3'- -GGGagaGGAGGuCGCGGG----CCUGGacc -5' |
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29015 | 3' | -61.8 | NC_006146.1 | + | 5164 | 0.66 | 0.72477 |
Target: 5'- gCCCUgcugaagUUCCUggCCAG-GCCCgagacguuuucccuGGGCCUGGg -3' miRNA: 3'- -GGGA-------GAGGA--GGUCgCGGG--------------CCUGGACC- -5' |
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29015 | 3' | -61.8 | NC_006146.1 | + | 29325 | 0.66 | 0.719176 |
Target: 5'- cCUCUCUcCCUCCccgaGGC-CCCGGcuCCUGa -3' miRNA: 3'- -GGGAGA-GGAGG----UCGcGGGCCu-GGACc -5' |
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29015 | 3' | -61.8 | NC_006146.1 | + | 13936 | 0.66 | 0.719176 |
Target: 5'- cCUCUCUcCCUCCccgaGGC-CCCGGcuCCUGa -3' miRNA: 3'- -GGGAGA-GGAGG----UCGcGGGCCu-GGACc -5' |
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29015 | 3' | -61.8 | NC_006146.1 | + | 17013 | 0.66 | 0.719176 |
Target: 5'- cCUCUCUcCCUCCccgaGGC-CCCGGcuCCUGa -3' miRNA: 3'- -GGGAGA-GGAGG----UCGcGGGCCu-GGACc -5' |
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29015 | 3' | -61.8 | NC_006146.1 | + | 20091 | 0.66 | 0.719176 |
Target: 5'- cCUCUCUcCCUCCccgaGGC-CCCGGcuCCUGa -3' miRNA: 3'- -GGGAGA-GGAGG----UCGcGGGCCu-GGACc -5' |
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29015 | 3' | -61.8 | NC_006146.1 | + | 23169 | 0.66 | 0.719176 |
Target: 5'- cCUCUCUcCCUCCccgaGGC-CCCGGcuCCUGa -3' miRNA: 3'- -GGGAGA-GGAGG----UCGcGGGCCu-GGACc -5' |
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29015 | 3' | -61.8 | NC_006146.1 | + | 26247 | 0.66 | 0.719176 |
Target: 5'- cCUCUCUcCCUCCccgaGGC-CCCGGcuCCUGa -3' miRNA: 3'- -GGGAGA-GGAGG----UCGcGGGCCu-GGACc -5' |
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29015 | 3' | -61.8 | NC_006146.1 | + | 168011 | 0.66 | 0.719176 |
Target: 5'- gCCCUCUCCUCCucuaagaguGGUGUCgaCGGuCC-GGu -3' miRNA: 3'- -GGGAGAGGAGG---------UCGCGG--GCCuGGaCC- -5' |
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29015 | 3' | -61.8 | NC_006146.1 | + | 60718 | 0.66 | 0.719176 |
Target: 5'- gCCgcaUCUCCaaCCGGCGCUgaGGcCCUGGa -3' miRNA: 3'- -GGg--AGAGGa-GGUCGCGGg-CCuGGACC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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