miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2902 5' -57 NC_001493.1 + 118759 0.66 0.86051
Target:  5'- aGGaCCCGGACgAGGucGAGGAUGC-Ca- -3'
miRNA:   3'- gCC-GGGCCUGgUUU--UUCCUGCGcGag -5'
2902 5' -57 NC_001493.1 + 3205 0.66 0.86051
Target:  5'- aGGaCCCGGACgAGGucGAGGAUGC-Ca- -3'
miRNA:   3'- gCC-GGGCCUGgUUU--UUCCUGCGcGag -5'
2902 5' -57 NC_001493.1 + 118536 0.66 0.86051
Target:  5'- aGGUCCGcACCGAAcccgcggauGGuCGUGCUCa -3'
miRNA:   3'- gCCGGGCcUGGUUUuu-------CCuGCGCGAG- -5'
2902 5' -57 NC_001493.1 + 23583 0.66 0.859744
Target:  5'- gCGGCCuuCGGuCCGAAAAaaauaaccgaguuGaACGCGCUCu -3'
miRNA:   3'- -GCCGG--GCCuGGUUUUU-------------CcUGCGCGAG- -5'
2902 5' -57 NC_001493.1 + 35635 0.66 0.852758
Target:  5'- aCGGCgCGucCCGGGuuucuuGGACGCGCg- -3'
miRNA:   3'- -GCCGgGCcuGGUUUuu----CCUGCGCGag -5'
2902 5' -57 NC_001493.1 + 5872 0.66 0.852758
Target:  5'- -cGUCCGGAUCAucGAGAGGGCGUuucccgggggaGCUg -3'
miRNA:   3'- gcCGGGCCUGGU--UUUUCCUGCG-----------CGAg -5'
2902 5' -57 NC_001493.1 + 48187 0.66 0.852758
Target:  5'- gGGCCgGGuuCGAc-AGGcUGCGCUCg -3'
miRNA:   3'- gCCGGgCCugGUUuuUCCuGCGCGAG- -5'
2902 5' -57 NC_001493.1 + 121426 0.66 0.852758
Target:  5'- -cGUCCGGAUCAucGAGAGGGCGUuucccgggggaGCUg -3'
miRNA:   3'- gcCGGGCCUGGU--UUUUCCUGCG-----------CGAg -5'
2902 5' -57 NC_001493.1 + 107255 0.66 0.850393
Target:  5'- gCGGCCgGGACCAaguuguuaacucccAAAGcGGGCGCcccgGCg- -3'
miRNA:   3'- -GCCGGgCCUGGU--------------UUUU-CCUGCG----CGag -5'
2902 5' -57 NC_001493.1 + 129252 0.66 0.844806
Target:  5'- gCGGUCCGGGgUAAGGGGGuACGgGUc- -3'
miRNA:   3'- -GCCGGGCCUgGUUUUUCC-UGCgCGag -5'
2902 5' -57 NC_001493.1 + 123889 0.66 0.844806
Target:  5'- gCGGUUCGGGCCGGG-GGGuCGgagGCUCg -3'
miRNA:   3'- -GCCGGGCCUGGUUUuUCCuGCg--CGAG- -5'
2902 5' -57 NC_001493.1 + 23397 0.66 0.844806
Target:  5'- cCGGaauCCCGG-CCAGGuGGGAugaUGCGCUg -3'
miRNA:   3'- -GCC---GGGCCuGGUUUuUCCU---GCGCGAg -5'
2902 5' -57 NC_001493.1 + 8335 0.66 0.844806
Target:  5'- gCGGUUCGGGCCGGG-GGGuCGgagGCUCg -3'
miRNA:   3'- -GCCGGGCCUGGUUUuUCCuGCg--CGAG- -5'
2902 5' -57 NC_001493.1 + 78919 0.66 0.844806
Target:  5'- cCGGCCuCGG-UCAGAccGcccGACGUGCUCc -3'
miRNA:   3'- -GCCGG-GCCuGGUUUuuC---CUGCGCGAG- -5'
2902 5' -57 NC_001493.1 + 19810 0.66 0.844806
Target:  5'- gGGaCCGGACCAGAgcGGGuuguucauggUGCGCa- -3'
miRNA:   3'- gCCgGGCCUGGUUUuuCCU----------GCGCGag -5'
2902 5' -57 NC_001493.1 + 133296 0.66 0.83666
Target:  5'- gCGuGCCCGGGaucguguuCCAGAucGGccugauaGCGCUCa -3'
miRNA:   3'- -GC-CGGGCCU--------GGUUUuuCCug-----CGCGAG- -5'
2902 5' -57 NC_001493.1 + 17742 0.66 0.83666
Target:  5'- gCGuGCCCGGGaucguguuCCAGAucGGccugauaGCGCUCa -3'
miRNA:   3'- -GC-CGGGCCU--------GGUUUuuCCug-----CGCGAG- -5'
2902 5' -57 NC_001493.1 + 51023 0.66 0.828329
Target:  5'- gGGUCCGGcCCAcagcucgcucAAGGuGGugGCaGCUCu -3'
miRNA:   3'- gCCGGGCCuGGU----------UUUU-CCugCG-CGAG- -5'
2902 5' -57 NC_001493.1 + 133165 0.66 0.828329
Target:  5'- aGGCCCGugggacccucGACCucAGAGGGgGUGCcCg -3'
miRNA:   3'- gCCGGGC----------CUGGuuUUUCCUgCGCGaG- -5'
2902 5' -57 NC_001493.1 + 108951 0.66 0.828329
Target:  5'- aGGCCCGGcACCuccucccguGAucGGAgcCGCGCcCg -3'
miRNA:   3'- gCCGGGCC-UGGu--------UUuuCCU--GCGCGaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.