miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29021 5' -59.7 NC_006146.1 + 117977 0.65 0.798167
Target:  5'- gGCGGacgaggccagcgCCCCCGGGGGGCCa------- -3'
miRNA:   3'- -UGCCa-----------GGGGGUCCUCCGGaaacaccu -5'
29021 5' -59.7 NC_006146.1 + 51648 0.66 0.791141
Target:  5'- cUGGaCUCCCAGGGGGCCagggccggUGccgGGAc -3'
miRNA:   3'- uGCCaGGGGGUCCUCCGGaa------ACa--CCU- -5'
29021 5' -59.7 NC_006146.1 + 156800 0.66 0.782237
Target:  5'- --aGUCCCCCcuGGAcgGGCCUgggGUGGc -3'
miRNA:   3'- ugcCAGGGGGu-CCU--CCGGAaa-CACCu -5'
29021 5' -59.7 NC_006146.1 + 153722 0.66 0.782237
Target:  5'- --aGUCCCCCcuGGAcgGGCCUgggGUGGc -3'
miRNA:   3'- ugcCAGGGGGu-CCU--CCGGAaa-CACCu -5'
29021 5' -59.7 NC_006146.1 + 150645 0.66 0.782237
Target:  5'- --aGUCCCCCcuGGAcgGGCCUgggGUGGc -3'
miRNA:   3'- ugcCAGGGGGu-CCU--CCGGAaa-CACCu -5'
29021 5' -59.7 NC_006146.1 + 147567 0.66 0.782237
Target:  5'- --aGUCCCCCcuGGAcgGGCCUgggGUGGc -3'
miRNA:   3'- ugcCAGGGGGu-CCU--CCGGAaa-CACCu -5'
29021 5' -59.7 NC_006146.1 + 144489 0.66 0.782237
Target:  5'- --aGUCCCCCcuGGAcgGGCCUgggGUGGc -3'
miRNA:   3'- ugcCAGGGGGu-CCU--CCGGAaa-CACCu -5'
29021 5' -59.7 NC_006146.1 + 141411 0.66 0.782237
Target:  5'- --aGUCCCCCcuGGAcgGGCCUgggGUGGc -3'
miRNA:   3'- ugcCAGGGGGu-CCU--CCGGAaa-CACCu -5'
29021 5' -59.7 NC_006146.1 + 50811 0.66 0.782237
Target:  5'- uACGGUCCCagGGGGGGauCCUUg--GGGg -3'
miRNA:   3'- -UGCCAGGGggUCCUCC--GGAAacaCCU- -5'
29021 5' -59.7 NC_006146.1 + 8968 0.66 0.782237
Target:  5'- -gGGUCUCCCAGGGuGCUauccaccGUGGAg -3'
miRNA:   3'- ugCCAGGGGGUCCUcCGGaaa----CACCU- -5'
29021 5' -59.7 NC_006146.1 + 148504 0.66 0.773206
Target:  5'- cACGGUggaCCCC-GG-GGCCaggGUGGAg -3'
miRNA:   3'- -UGCCAg--GGGGuCCuCCGGaaaCACCU- -5'
29021 5' -59.7 NC_006146.1 + 51739 0.66 0.773206
Target:  5'- gGCGGcgCCCCgAGGuGGGCUUcUUGUGcGGg -3'
miRNA:   3'- -UGCCa-GGGGgUCC-UCCGGA-AACAC-CU- -5'
29021 5' -59.7 NC_006146.1 + 139451 0.66 0.764056
Target:  5'- cACGGUgCCCgGGGGGguGCCUgcacUGGAg -3'
miRNA:   3'- -UGCCAgGGGgUCCUC--CGGAaac-ACCU- -5'
29021 5' -59.7 NC_006146.1 + 153988 0.66 0.754796
Target:  5'- -gGGUCCCuCCGGccGGCCUgauggacccgGUGGGg -3'
miRNA:   3'- ugCCAGGG-GGUCcuCCGGAaa--------CACCU- -5'
29021 5' -59.7 NC_006146.1 + 150910 0.66 0.754796
Target:  5'- -gGGUCCCuCCGGccGGCCUgauggacccgGUGGGg -3'
miRNA:   3'- ugCCAGGG-GGUCcuCCGGAaa--------CACCU- -5'
29021 5' -59.7 NC_006146.1 + 147832 0.66 0.754796
Target:  5'- -gGGUCCCuCCGGccGGCCUgauggacccgGUGGGg -3'
miRNA:   3'- ugCCAGGG-GGUCcuCCGGAaa--------CACCU- -5'
29021 5' -59.7 NC_006146.1 + 144754 0.66 0.754796
Target:  5'- -gGGUCCCuCCGGccGGCCUgauggacccgGUGGGg -3'
miRNA:   3'- ugCCAGGG-GGUCcuCCGGAaa--------CACCU- -5'
29021 5' -59.7 NC_006146.1 + 141677 0.66 0.754796
Target:  5'- -gGGUCCCuCCGGccGGCCUgauggacccgGUGGGg -3'
miRNA:   3'- ugCCAGGG-GGUCcuCCGGAaa--------CACCU- -5'
29021 5' -59.7 NC_006146.1 + 12723 0.66 0.754796
Target:  5'- -gGGUCCUgacggCCaAGGAGGCCaagGUGGu -3'
miRNA:   3'- ugCCAGGG-----GG-UCCUCCGGaaaCACCu -5'
29021 5' -59.7 NC_006146.1 + 157066 0.66 0.754796
Target:  5'- -gGGUCCCuCCGGccGGCCUgauggacccgGUGGGg -3'
miRNA:   3'- ugCCAGGG-GGUCcuCCGGAaa--------CACCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.