miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29022 3' -51.9 NC_006146.1 + 101929 0.66 0.989069
Target:  5'- cCgGUGGCCGcGGggGC-GGUGAcCg-- -3'
miRNA:   3'- -GgUACCGGC-UCuuCGaCCACUuGaaa -5'
29022 3' -51.9 NC_006146.1 + 102594 0.66 0.987578
Target:  5'- ---aGGUCGGGggGUcuaggGGUGAGCg-- -3'
miRNA:   3'- gguaCCGGCUCuuCGa----CCACUUGaaa -5'
29022 3' -51.9 NC_006146.1 + 65496 0.66 0.987578
Target:  5'- --cUGGCCGGcguGggGCUGGuUGGugUg- -3'
miRNA:   3'- gguACCGGCU---CuuCGACC-ACUugAaa -5'
29022 3' -51.9 NC_006146.1 + 75275 0.66 0.985935
Target:  5'- -gAUGGCCGAGGAGCcGa-GAGCg-- -3'
miRNA:   3'- ggUACCGGCUCUUCGaCcaCUUGaaa -5'
29022 3' -51.9 NC_006146.1 + 51413 0.66 0.985935
Target:  5'- ---gGGCUGAGGAGUUGGagugcgcgGGACUa- -3'
miRNA:   3'- gguaCCGGCUCUUCGACCa-------CUUGAaa -5'
29022 3' -51.9 NC_006146.1 + 74437 0.66 0.985412
Target:  5'- gCCGUGGCUGAGugaagaccccgaggGAGCaguggacagggGGUGGACa-- -3'
miRNA:   3'- -GGUACCGGCUC--------------UUCGa----------CCACUUGaaa -5'
29022 3' -51.9 NC_006146.1 + 57125 0.66 0.984131
Target:  5'- aUAUGGUcccuaauuuCGGGggGCUGGUGGccgaccgccGCUUc -3'
miRNA:   3'- gGUACCG---------GCUCuuCGACCACU---------UGAAa -5'
29022 3' -51.9 NC_006146.1 + 67073 0.66 0.984131
Target:  5'- gCCAgacgGGCCGAGAAGg-GGUcGGCg-- -3'
miRNA:   3'- -GGUa---CCGGCUCUUCgaCCAcUUGaaa -5'
29022 3' -51.9 NC_006146.1 + 88559 0.66 0.984131
Target:  5'- uCCGUGGugcuccguaacCCGGauauGGAGCUGGUGGggGCUg- -3'
miRNA:   3'- -GGUACC-----------GGCU----CUUCGACCACU--UGAaa -5'
29022 3' -51.9 NC_006146.1 + 116829 0.66 0.984131
Target:  5'- aCGUGuGCCGGGAcgcGGCggccaGGUGGGCc-- -3'
miRNA:   3'- gGUAC-CGGCUCU---UCGa----CCACUUGaaa -5'
29022 3' -51.9 NC_006146.1 + 44788 0.66 0.982157
Target:  5'- cCCA-GGCCGGGGAuCUGGaUGGugUg- -3'
miRNA:   3'- -GGUaCCGGCUCUUcGACC-ACUugAaa -5'
29022 3' -51.9 NC_006146.1 + 2926 0.67 0.980003
Target:  5'- aCCAUGuuuaCCGGGGAGCUGG-GAGu--- -3'
miRNA:   3'- -GGUACc---GGCUCUUCGACCaCUUgaaa -5'
29022 3' -51.9 NC_006146.1 + 15411 0.67 0.977661
Target:  5'- gCCAggUGGCCucaGAGggGCUGGcccGGCUg- -3'
miRNA:   3'- -GGU--ACCGG---CUCuuCGACCac-UUGAaa -5'
29022 3' -51.9 NC_006146.1 + 65400 0.67 0.977661
Target:  5'- ---aGGCUGAGAGauauCUGGUGGACg-- -3'
miRNA:   3'- gguaCCGGCUCUUc---GACCACUUGaaa -5'
29022 3' -51.9 NC_006146.1 + 24287 0.67 0.977661
Target:  5'- aCCcUGGCCG-GggGCUGGac-GCUg- -3'
miRNA:   3'- -GGuACCGGCuCuuCGACCacuUGAaa -5'
29022 3' -51.9 NC_006146.1 + 121201 0.67 0.977661
Target:  5'- uCCGUGGCCccugGAGAGGgUGGaggaGGACg-- -3'
miRNA:   3'- -GGUACCGG----CUCUUCgACCa---CUUGaaa -5'
29022 3' -51.9 NC_006146.1 + 109188 0.67 0.973504
Target:  5'- uCUGUGGCCGGGGgcauguagGGCaucagagcgcaggugUGGUGGGCUc- -3'
miRNA:   3'- -GGUACCGGCUCU--------UCG---------------ACCACUUGAaa -5'
29022 3' -51.9 NC_006146.1 + 41605 0.67 0.972382
Target:  5'- ---aGGcCCGGGggGCUGGUccGCUg- -3'
miRNA:   3'- gguaCC-GGCUCuuCGACCAcuUGAaa -5'
29022 3' -51.9 NC_006146.1 + 51218 0.67 0.969429
Target:  5'- uCCAcgaGGCCGGGGuGGCgGGUGAGgUUg -3'
miRNA:   3'- -GGUa--CCGGCUCU-UCGaCCACUUgAAa -5'
29022 3' -51.9 NC_006146.1 + 4416 0.67 0.969429
Target:  5'- uCCGgacGGUCcAGggGCUGGUGAAa--- -3'
miRNA:   3'- -GGUa--CCGGcUCuuCGACCACUUgaaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.