miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29022 5' -51.2 NC_006146.1 + 10231 0.66 0.994436
Target:  5'- ---cCUGGUCauguGCCGGCUccUGAaGGCCu -3'
miRNA:   3'- acuuGACCAG----UGGUCGAa-ACUcUCGG- -5'
29022 5' -51.2 NC_006146.1 + 126857 0.66 0.994436
Target:  5'- aGGACgcuccaGGUCGaguucCCGGCUUU--GAGCCa -3'
miRNA:   3'- aCUUGa-----CCAGU-----GGUCGAAAcuCUCGG- -5'
29022 5' -51.2 NC_006146.1 + 65537 0.66 0.992564
Target:  5'- aGAcCUGGUgGcCCAGCaacucAGAGCCu -3'
miRNA:   3'- aCUuGACCAgU-GGUCGaaac-UCUCGG- -5'
29022 5' -51.2 NC_006146.1 + 125791 0.66 0.991457
Target:  5'- -cGGC-GGUCACCGGCc----GAGCCg -3'
miRNA:   3'- acUUGaCCAGUGGUCGaaacuCUCGG- -5'
29022 5' -51.2 NC_006146.1 + 125598 0.66 0.991457
Target:  5'- gGAGCUGuUCuCCGGCUUUccaccGAGGGUg -3'
miRNA:   3'- aCUUGACcAGuGGUCGAAA-----CUCUCGg -5'
29022 5' -51.2 NC_006146.1 + 17786 0.66 0.991457
Target:  5'- aGAGCaugagGGUCcCgGGCUccGAGAGCa -3'
miRNA:   3'- aCUUGa----CCAGuGgUCGAaaCUCUCGg -5'
29022 5' -51.2 NC_006146.1 + 133086 0.66 0.990223
Target:  5'- gGGGgUGGUC-CC-GCUccGAGAGCUu -3'
miRNA:   3'- aCUUgACCAGuGGuCGAaaCUCUCGG- -5'
29022 5' -51.2 NC_006146.1 + 53770 0.66 0.990223
Target:  5'- cGGGCggaGGUCucGCCGGac--GAGGGCCu -3'
miRNA:   3'- aCUUGa--CCAG--UGGUCgaaaCUCUCGG- -5'
29022 5' -51.2 NC_006146.1 + 46783 0.66 0.990223
Target:  5'- gGAugGCUGGcCgGCCGGCgc-GAGGGCa -3'
miRNA:   3'- aCU--UGACCaG-UGGUCGaaaCUCUCGg -5'
29022 5' -51.2 NC_006146.1 + 69378 0.66 0.989827
Target:  5'- cGAGCUGGcagaagCGCCGGUacuugUUGAGGaacacggucugcucGCCa -3'
miRNA:   3'- aCUUGACCa-----GUGGUCGa----AACUCU--------------CGG- -5'
29022 5' -51.2 NC_006146.1 + 85825 0.66 0.988853
Target:  5'- gGAGCUGGU-GCCuuGGCUUUaaaaGAgGAGCUg -3'
miRNA:   3'- aCUUGACCAgUGG--UCGAAA----CU-CUCGG- -5'
29022 5' -51.2 NC_006146.1 + 107922 0.67 0.987339
Target:  5'- aUGGGa-GGUCGUCAGCUccUGGGAGCUc -3'
miRNA:   3'- -ACUUgaCCAGUGGUCGAa-ACUCUCGG- -5'
29022 5' -51.2 NC_006146.1 + 169168 0.67 0.987339
Target:  5'- gGGGCcGG-CGCCuGCaggGGGGGCCg -3'
miRNA:   3'- aCUUGaCCaGUGGuCGaaaCUCUCGG- -5'
29022 5' -51.2 NC_006146.1 + 4332 0.67 0.987339
Target:  5'- aGGGCgGGUCGCU--CUUUGAGcAGCUc -3'
miRNA:   3'- aCUUGaCCAGUGGucGAAACUC-UCGG- -5'
29022 5' -51.2 NC_006146.1 + 168236 0.67 0.987339
Target:  5'- gGGGCcGG-CGCCuGCaggGGGGGCCg -3'
miRNA:   3'- aCUUGaCCaGUGGuCGaaaCUCUCGG- -5'
29022 5' -51.2 NC_006146.1 + 167304 0.67 0.987339
Target:  5'- gGGGCcGG-CGCCuGCaggGGGGGCCg -3'
miRNA:   3'- aCUUGaCCaGUGGuCGaaaCUCUCGG- -5'
29022 5' -51.2 NC_006146.1 + 129465 0.67 0.987339
Target:  5'- ----aUGGUgcaaGCUAGCgagGAGAGCCg -3'
miRNA:   3'- acuugACCAg---UGGUCGaaaCUCUCGG- -5'
29022 5' -51.2 NC_006146.1 + 62108 0.67 0.985671
Target:  5'- aGGACUGcUCGCCucGGCgg-GAGAccuGCCa -3'
miRNA:   3'- aCUUGACcAGUGG--UCGaaaCUCU---CGG- -5'
29022 5' -51.2 NC_006146.1 + 4480 0.67 0.979654
Target:  5'- gGGGCUGGUUACguGuCUUgugGAGAuggcacuggcggGCCa -3'
miRNA:   3'- aCUUGACCAGUGguC-GAAa--CUCU------------CGG- -5'
29022 5' -51.2 NC_006146.1 + 46934 0.67 0.979654
Target:  5'- gGGACUcGGUCuCCAGCcacaGGGuGCCc -3'
miRNA:   3'- aCUUGA-CCAGuGGUCGaaa-CUCuCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.