miRNA display CGI


Results 1 - 20 of 142 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29024 3' -57.6 NC_006146.1 + 110005 0.66 0.868278
Target:  5'- aGCUcCugGAuCCAcuGGGCCCcaGGCCGg -3'
miRNA:   3'- gCGAaGuuCU-GGU--UCCGGGa-CCGGCa -5'
29024 3' -57.6 NC_006146.1 + 32136 0.66 0.868278
Target:  5'- aCGUagCAGGuuaGCCAGGGCCgUGGCa-- -3'
miRNA:   3'- -GCGaaGUUC---UGGUUCCGGgACCGgca -5'
29024 3' -57.6 NC_006146.1 + 147441 0.66 0.868278
Target:  5'- gGC--CAcGGCCAGGGCCUcguaGGCCGa -3'
miRNA:   3'- gCGaaGUuCUGGUUCCGGGa---CCGGCa -5'
29024 3' -57.6 NC_006146.1 + 67190 0.66 0.868278
Target:  5'- uGCUccUUggGAuuCCAcuGGCCgUGGCCGg -3'
miRNA:   3'- gCGA--AGuuCU--GGUu-CCGGgACCGGCa -5'
29024 3' -57.6 NC_006146.1 + 155150 0.66 0.868278
Target:  5'- uCGCagCAgcGGGCCAGGGCCacguugCUGGgCGg -3'
miRNA:   3'- -GCGaaGU--UCUGGUUCCGG------GACCgGCa -5'
29024 3' -57.6 NC_006146.1 + 20226 0.66 0.868278
Target:  5'- uGCgugCAGGAUUc-GGCCCUGGUCa- -3'
miRNA:   3'- gCGaa-GUUCUGGuuCCGGGACCGGca -5'
29024 3' -57.6 NC_006146.1 + 14837 0.66 0.868278
Target:  5'- gGUcUCGGGcCCGGGGCCgCgggaGGCCGa -3'
miRNA:   3'- gCGaAGUUCuGGUUCCGG-Ga---CCGGCa -5'
29024 3' -57.6 NC_006146.1 + 24257 0.66 0.863833
Target:  5'- uGUUUUcuGACCAuGGacccaggccucgugaCCCUGGCCGg -3'
miRNA:   3'- gCGAAGuuCUGGUuCC---------------GGGACCGGCa -5'
29024 3' -57.6 NC_006146.1 + 83710 0.66 0.860828
Target:  5'- uGCUgCAcaGCCuguAGGaCCCUGGCCa- -3'
miRNA:   3'- gCGAaGUucUGGu--UCC-GGGACCGGca -5'
29024 3' -57.6 NC_006146.1 + 62368 0.66 0.860828
Target:  5'- aCGCcgCGccGGA--GAGGcCCCUGGCCGUu -3'
miRNA:   3'- -GCGaaGU--UCUggUUCC-GGGACCGGCA- -5'
29024 3' -57.6 NC_006146.1 + 110102 0.66 0.860828
Target:  5'- aCGg-UCcGGACC-AGGCCCUGGaCCu- -3'
miRNA:   3'- -GCgaAGuUCUGGuUCCGGGACC-GGca -5'
29024 3' -57.6 NC_006146.1 + 95524 0.66 0.860828
Target:  5'- aGCUgUCGGGugC--GGCgCCUGGCCa- -3'
miRNA:   3'- gCGA-AGUUCugGuuCCG-GGACCGGca -5'
29024 3' -57.6 NC_006146.1 + 136759 0.66 0.860828
Target:  5'- uCGC--CGGGGCUccggGAGGCCC-GGCCGc -3'
miRNA:   3'- -GCGaaGUUCUGG----UUCCGGGaCCGGCa -5'
29024 3' -57.6 NC_006146.1 + 49067 0.66 0.860828
Target:  5'- gGCUggaUCGaaggaGGGCUGAGGCUCcGGCUGUg -3'
miRNA:   3'- gCGA---AGU-----UCUGGUUCCGGGaCCGGCA- -5'
29024 3' -57.6 NC_006146.1 + 78024 0.66 0.860828
Target:  5'- gGCcuagCAGGuACCuGGGCUCgUGGCCGa -3'
miRNA:   3'- gCGaa--GUUC-UGGuUCCGGG-ACCGGCa -5'
29024 3' -57.6 NC_006146.1 + 99308 0.66 0.860072
Target:  5'- cCGCcuggUCAGGGCCAgaccugcugcggaAGccGCUCUGGCUGUc -3'
miRNA:   3'- -GCGa---AGUUCUGGU-------------UC--CGGGACCGGCA- -5'
29024 3' -57.6 NC_006146.1 + 110709 0.66 0.856261
Target:  5'- uGCUguuuguggaCGAGGCCAacuuuaucaagaaggAGGCCCUG-CCGg -3'
miRNA:   3'- gCGAa--------GUUCUGGU---------------UCCGGGACcGGCa -5'
29024 3' -57.6 NC_006146.1 + 114973 0.66 0.853177
Target:  5'- aCGCagCAgcccacggccgcGGACauCAAGGCCaUGGCCGUg -3'
miRNA:   3'- -GCGaaGU------------UCUG--GUUCCGGgACCGGCA- -5'
29024 3' -57.6 NC_006146.1 + 126241 0.66 0.853177
Target:  5'- cCGUUUUggGAcCCAGGcGCCCgGGCUu- -3'
miRNA:   3'- -GCGAAGuuCU-GGUUC-CGGGaCCGGca -5'
29024 3' -57.6 NC_006146.1 + 2368 0.66 0.852401
Target:  5'- cCGCcccCGAGGCCcccagggGAGGCCC-GGCCu- -3'
miRNA:   3'- -GCGaa-GUUCUGG-------UUCCGGGaCCGGca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.