miRNA display CGI


Results 1 - 20 of 340 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29028 3' -53.8 NC_006146.1 + 33398 0.65 0.965063
Target:  5'- cGGGUgGGggGU----GGCCCgccugggcaccgcUGCGCCg -3'
miRNA:   3'- -CUCGgUCuuCGauuuUCGGG-------------ACGCGG- -5'
29028 3' -53.8 NC_006146.1 + 33276 0.65 0.965063
Target:  5'- cGGGUgGGggGU----GGCCCggcugggcaccgcUGCGCCg -3'
miRNA:   3'- -CUCGgUCuuCGauuuUCGGG-------------ACGCGG- -5'
29028 3' -53.8 NC_006146.1 + 167808 0.65 0.964391
Target:  5'- aGGCCGGAgaagAGCUccAGAGCggucuggacgguagCCUGgGCCa -3'
miRNA:   3'- cUCGGUCU----UCGAu-UUUCG--------------GGACgCGG- -5'
29028 3' -53.8 NC_006146.1 + 122159 0.66 0.961968
Target:  5'- aGGCCGGgcGCaaggagaAGGAGCUgCUGCGCg -3'
miRNA:   3'- cUCGGUCuuCGa------UUUUCGG-GACGCGg -5'
29028 3' -53.8 NC_006146.1 + 25178 0.66 0.961968
Target:  5'- cGGCCAGAgcgacaucaAGCUGAcgcGCuCCUGCuCCc -3'
miRNA:   3'- cUCGGUCU---------UCGAUUuu-CG-GGACGcGG- -5'
29028 3' -53.8 NC_006146.1 + 15968 0.66 0.961968
Target:  5'- aGAcCUGGggGCguu---CCCUGCGCCu -3'
miRNA:   3'- -CUcGGUCuuCGauuuucGGGACGCGG- -5'
29028 3' -53.8 NC_006146.1 + 149996 0.66 0.961968
Target:  5'- cGGCCGGAcucagGGCcuccacGAAGGCCUUG-GCCc -3'
miRNA:   3'- cUCGGUCU-----UCGa-----UUUUCGGGACgCGG- -5'
29028 3' -53.8 NC_006146.1 + 128832 0.66 0.961968
Target:  5'- cGGuCCAGGAGCagguAAGCCCg--GCCa -3'
miRNA:   3'- cUC-GGUCUUCGauu-UUCGGGacgCGG- -5'
29028 3' -53.8 NC_006146.1 + 58541 0.66 0.961968
Target:  5'- cGGCCGGucagcguGGCggccuacauGGAGCCCUGgcacaGCCa -3'
miRNA:   3'- cUCGGUCu------UCGau-------UUUCGGGACg----CGG- -5'
29028 3' -53.8 NC_006146.1 + 67782 0.66 0.961968
Target:  5'- cGGCCAGGgacgugacGGCggccAGGCUCUGCcccGCCu -3'
miRNA:   3'- cUCGGUCU--------UCGauu-UUCGGGACG---CGG- -5'
29028 3' -53.8 NC_006146.1 + 50281 0.66 0.961968
Target:  5'- gGGGCCaAGggGCgcaGGAGaUCUgucagGCGCCg -3'
miRNA:   3'- -CUCGG-UCuuCGau-UUUC-GGGa----CGCGG- -5'
29028 3' -53.8 NC_006146.1 + 94169 0.66 0.961968
Target:  5'- uGGGCCuccacGAAGCUGucGGCCUcgaGCGUg -3'
miRNA:   3'- -CUCGGu----CUUCGAUuuUCGGGa--CGCGg -5'
29028 3' -53.8 NC_006146.1 + 109401 0.66 0.961612
Target:  5'- aGGGCggCAGggGCcuccucGGAGCCCUGgugauccUGCCa -3'
miRNA:   3'- -CUCG--GUCuuCGau----UUUCGGGAC-------GCGG- -5'
29028 3' -53.8 NC_006146.1 + 123096 0.66 0.959802
Target:  5'- cGAGCCcaugagacggcgguGGgcGCUAGAcggggcuuucagacGGCCCUGgagGCCg -3'
miRNA:   3'- -CUCGG--------------UCuuCGAUUU--------------UCGGGACg--CGG- -5'
29028 3' -53.8 NC_006146.1 + 47835 0.66 0.958311
Target:  5'- -uGCCAGAgcgcGGCUcucGAGGaCCCUcuccuccaGCGCCc -3'
miRNA:   3'- cuCGGUCU----UCGAu--UUUC-GGGA--------CGCGG- -5'
29028 3' -53.8 NC_006146.1 + 39757 0.66 0.958311
Target:  5'- cGGCUGGAGGCUGGGgcuuggagucAGgCUUGgGCCc -3'
miRNA:   3'- cUCGGUCUUCGAUUU----------UCgGGACgCGG- -5'
29028 3' -53.8 NC_006146.1 + 131590 0.66 0.958311
Target:  5'- aGGCCAGccGAGCccaguacacAGGCCuCUGCuGCCa -3'
miRNA:   3'- cUCGGUC--UUCGauu------UUCGG-GACG-CGG- -5'
29028 3' -53.8 NC_006146.1 + 142129 0.66 0.958311
Target:  5'- -cGuCCucuGGaCUAGGGGCCCUGgGCCc -3'
miRNA:   3'- cuC-GGucuUC-GAUUUUCGGGACgCGG- -5'
29028 3' -53.8 NC_006146.1 + 145207 0.66 0.958311
Target:  5'- -cGuCCucuGGaCUAGGGGCCCUGgGCCc -3'
miRNA:   3'- cuC-GGucuUC-GAUUUUCGGGACgCGG- -5'
29028 3' -53.8 NC_006146.1 + 151363 0.66 0.958311
Target:  5'- -cGuCCucuGGaCUAGGGGCCCUGgGCCc -3'
miRNA:   3'- cuC-GGucuUC-GAUUUUCGGGACgCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.