miRNA display CGI


Results 1 - 20 of 231 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29028 5' -56.5 NC_006146.1 + 170655 0.74 0.488616
Target:  5'- gUGGcGCGCAGAucgGCgcgggggaggCCAggGGCGCCCCg -3'
miRNA:   3'- -ACC-CGCGUCU---UGa---------GGUagUUGCGGGG- -5'
29028 5' -56.5 NC_006146.1 + 170597 0.68 0.81059
Target:  5'- cUGGGCGUggcGAGCgcgCCGggccCGCCCCc -3'
miRNA:   3'- -ACCCGCGu--CUUGa--GGUaguuGCGGGG- -5'
29028 5' -56.5 NC_006146.1 + 170540 0.67 0.881371
Target:  5'- gGGGCGCGGcGAUU--GUCGcCGCCCUc -3'
miRNA:   3'- aCCCGCGUC-UUGAggUAGUuGCGGGG- -5'
29028 5' -56.5 NC_006146.1 + 170414 0.66 0.888225
Target:  5'- cGGGgGCGGAggggggGgUCCcgCGGgGCCCg -3'
miRNA:   3'- aCCCgCGUCU------UgAGGuaGUUgCGGGg -5'
29028 5' -56.5 NC_006146.1 + 170305 0.75 0.442548
Target:  5'- aGGGgGCAGGGCUggcgCCGggCcGCGCCCCc -3'
miRNA:   3'- aCCCgCGUCUUGA----GGUa-GuUGCGGGG- -5'
29028 5' -56.5 NC_006146.1 + 170118 0.69 0.74644
Target:  5'- gGGGCcgGCGGGGCgucCCGUCGucACGCUCg -3'
miRNA:   3'- aCCCG--CGUCUUGa--GGUAGU--UGCGGGg -5'
29028 5' -56.5 NC_006146.1 + 169723 0.66 0.890905
Target:  5'- gUGGGCGCucagaucggcgcgggGGAGCcCCGg-GGCGgCCCg -3'
miRNA:   3'- -ACCCGCG---------------UCUUGaGGUagUUGCgGGG- -5'
29028 5' -56.5 NC_006146.1 + 169609 0.67 0.881371
Target:  5'- gGGGCGCGGcGAUU--GUCGcCGCCCUc -3'
miRNA:   3'- aCCCGCGUC-UUGAggUAGUuGCGGGG- -5'
29028 5' -56.5 NC_006146.1 + 169483 0.66 0.888225
Target:  5'- cGGGgGCGGAggggggGgUCCcgCGGgGCCCg -3'
miRNA:   3'- aCCCgCGUCU------UgAGGuaGUUgCGGGg -5'
29028 5' -56.5 NC_006146.1 + 169374 0.75 0.442548
Target:  5'- aGGGgGCAGGGCUggcgCCGggCcGCGCCCCc -3'
miRNA:   3'- aCCCgCGUCUUGA----GGUa-GuUGCGGGG- -5'
29028 5' -56.5 NC_006146.1 + 169187 0.69 0.74644
Target:  5'- gGGGCcgGCGGGGCgucCCGUCGucACGCUCg -3'
miRNA:   3'- aCCCG--CGUCUUGa--GGUAGU--UGCGGGg -5'
29028 5' -56.5 NC_006146.1 + 168791 0.66 0.890905
Target:  5'- gUGGGCGCucagaucggcgcgggGGAGCcCCGg-GGCGgCCCg -3'
miRNA:   3'- -ACCCGCG---------------UCUUGaGGUagUUGCgGGG- -5'
29028 5' -56.5 NC_006146.1 + 168676 0.67 0.881371
Target:  5'- gGGGCGCGGcGAUU--GUCGcCGCCCUc -3'
miRNA:   3'- aCCCGCGUC-UUGAggUAGUuGCGGGG- -5'
29028 5' -56.5 NC_006146.1 + 168551 0.66 0.888225
Target:  5'- cGGGgGCGGAggggggGgUCCcgCGGgGCCCg -3'
miRNA:   3'- aCCCgCGUCU------UgAGGuaGUUgCGGGg -5'
29028 5' -56.5 NC_006146.1 + 168442 0.75 0.442548
Target:  5'- aGGGgGCAGGGCUggcgCCGggCcGCGCCCCc -3'
miRNA:   3'- aCCCgCGUCUUGA----GGUa-GuUGCGGGG- -5'
29028 5' -56.5 NC_006146.1 + 168255 0.69 0.74644
Target:  5'- gGGGCcgGCGGGGCgucCCGUCGucACGCUCg -3'
miRNA:   3'- aCCCG--CGUCUUGa--GGUAGU--UGCGGGg -5'
29028 5' -56.5 NC_006146.1 + 168000 0.67 0.847126
Target:  5'- gUGGGCGuCAGGcccuCUCCuccucuaagagugguGUCGACGgUCCg -3'
miRNA:   3'- -ACCCGC-GUCUu---GAGG---------------UAGUUGCgGGG- -5'
29028 5' -56.5 NC_006146.1 + 167879 0.69 0.774698
Target:  5'- aGGuGCGguGAgguuGCUCCAgggauggaAAgGCCCCa -3'
miRNA:   3'- aCC-CGCguCU----UGAGGUag------UUgCGGGG- -5'
29028 5' -56.5 NC_006146.1 + 167859 0.66 0.890905
Target:  5'- gUGGGCGCucagaucggcgcgggGGAGCcCCGg-GGCGgCCCg -3'
miRNA:   3'- -ACCCGCG---------------UCUUGaGGUagUUGCgGGG- -5'
29028 5' -56.5 NC_006146.1 + 167754 0.66 0.907446
Target:  5'- aGGGCGCAGGGg-CCGggugggcgcgCAugGCUCg -3'
miRNA:   3'- aCCCGCGUCUUgaGGUa---------GUugCGGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.