miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2903 5' -56 NC_001493.1 + 54865 0.66 0.907696
Target:  5'- cGgGGAGCgAGuggUGCGAGCCgccccggucaGCGCCc -3'
miRNA:   3'- cCgCCUCG-UCua-GCGCUUGGa---------CGUGG- -5'
2903 5' -56 NC_001493.1 + 95695 0.66 0.907696
Target:  5'- aGCGGGGauguugcGAUCGUGAcucuCCguagGCGCCc -3'
miRNA:   3'- cCGCCUCgu-----CUAGCGCUu---GGa---CGUGG- -5'
2903 5' -56 NC_001493.1 + 93656 0.66 0.901451
Target:  5'- aGCGGcccuGCAGGUCGCGcccGCCgauuUACCc -3'
miRNA:   3'- cCGCCu---CGUCUAGCGCu--UGGac--GUGG- -5'
2903 5' -56 NC_001493.1 + 54189 0.66 0.901451
Target:  5'- aGGUGaAGCgAGGggcCGCGAACCUggaGCACa -3'
miRNA:   3'- -CCGCcUCG-UCUa--GCGCUUGGA---CGUGg -5'
2903 5' -56 NC_001493.1 + 40454 0.66 0.901451
Target:  5'- --aGGAGCuGGAcCGCGAcgauaccgcacGCCuggUGCACCg -3'
miRNA:   3'- ccgCCUCG-UCUaGCGCU-----------UGG---ACGUGG- -5'
2903 5' -56 NC_001493.1 + 45672 0.66 0.901451
Target:  5'- cGCGGcG-AGAUUGCccGCCUGUGCCc -3'
miRNA:   3'- cCGCCuCgUCUAGCGcuUGGACGUGG- -5'
2903 5' -56 NC_001493.1 + 96910 0.66 0.894973
Target:  5'- aGCGGAGCAagagcgucGAUCaCGAACCUcuuCCg -3'
miRNA:   3'- cCGCCUCGU--------CUAGcGCUUGGAcguGG- -5'
2903 5' -56 NC_001493.1 + 15869 0.66 0.894973
Target:  5'- cGgGGAGCGG-UCGCacGGCCgUGCGCa -3'
miRNA:   3'- cCgCCUCGUCuAGCGc-UUGG-ACGUGg -5'
2903 5' -56 NC_001493.1 + 131423 0.66 0.894973
Target:  5'- cGgGGAGCGG-UCGCacGGCCgUGCGCa -3'
miRNA:   3'- cCgCCUCGUCuAGCGc-UUGG-ACGUGg -5'
2903 5' -56 NC_001493.1 + 99098 0.66 0.888264
Target:  5'- cGCGcGAuGC-GAUCGCGAACCcGCGu- -3'
miRNA:   3'- cCGC-CU-CGuCUAGCGCUUGGaCGUgg -5'
2903 5' -56 NC_001493.1 + 112645 0.66 0.881329
Target:  5'- uGGCGucccucaccCAGAaguUCGCgucGAGCCUGCGCCc -3'
miRNA:   3'- -CCGCcuc------GUCU---AGCG---CUUGGACGUGG- -5'
2903 5' -56 NC_001493.1 + 75165 0.66 0.881329
Target:  5'- aGGCcaaGAGCAcGAUgGCGAagAUgUGUACCa -3'
miRNA:   3'- -CCGc--CUCGU-CUAgCGCU--UGgACGUGG- -5'
2903 5' -56 NC_001493.1 + 31810 0.66 0.881329
Target:  5'- cGGUGGucGCGGugaggaaCGCGGAUCgGUACCu -3'
miRNA:   3'- -CCGCCu-CGUCua-----GCGCUUGGaCGUGG- -5'
2903 5' -56 NC_001493.1 + 11979 0.66 0.880623
Target:  5'- cGCGGGGUucgauacggacagGGGUUGUGAGCguugGUACCg -3'
miRNA:   3'- cCGCCUCG-------------UCUAGCGCUUGga--CGUGG- -5'
2903 5' -56 NC_001493.1 + 127534 0.66 0.880623
Target:  5'- cGCGGGGUucgauacggacagGGGUUGUGAGCguugGUACCg -3'
miRNA:   3'- cCGCCUCG-------------UCUAGCGCUUGga--CGUGG- -5'
2903 5' -56 NC_001493.1 + 5548 0.66 0.877061
Target:  5'- aGGUGGGGCucccggacuugggcgGGAggaGCGAGCCgcGgACCg -3'
miRNA:   3'- -CCGCCUCG---------------UCUag-CGCUUGGa-CgUGG- -5'
2903 5' -56 NC_001493.1 + 121103 0.66 0.877061
Target:  5'- aGGUGGGGCucccggacuugggcgGGAggaGCGAGCCgcGgACCg -3'
miRNA:   3'- -CCGCCUCG---------------UCUag-CGCUUGGa-CgUGG- -5'
2903 5' -56 NC_001493.1 + 2953 0.66 0.874172
Target:  5'- cGGCGGGGguGAgguucuUCcCGAGuCCgagguccGCACCg -3'
miRNA:   3'- -CCGCCUCguCU------AGcGCUU-GGa------CGUGG- -5'
2903 5' -56 NC_001493.1 + 118507 0.66 0.874172
Target:  5'- cGGCGGGGguGAgguucuUCcCGAGuCCgagguccGCACCg -3'
miRNA:   3'- -CCGCCUCguCU------AGcGCUU-GGa------CGUGG- -5'
2903 5' -56 NC_001493.1 + 51820 0.67 0.866798
Target:  5'- uGGaaaGGAGCg---CGCGAcCCUugGCACCa -3'
miRNA:   3'- -CCg--CCUCGucuaGCGCUuGGA--CGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.