miRNA display CGI


Results 1 - 20 of 217 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29042 3' -56.7 NC_006146.1 + 56518 0.66 0.889487
Target:  5'- gGGGUcGUcgccGGCCAuCAGCAGCUgacgcgucacgcgggCCAGGCc -3'
miRNA:   3'- -CUCAaCG----UCGGU-GUUGUCGG---------------GGUCCG- -5'
29042 3' -56.7 NC_006146.1 + 142862 0.66 0.886751
Target:  5'- --aUUGCAGCCACcu--GCCCUccGGCu -3'
miRNA:   3'- cucAACGUCGGUGuuguCGGGGu-CCG- -5'
29042 3' -56.7 NC_006146.1 + 48095 0.66 0.886751
Target:  5'- ----gGCGGCCgACAgcGCGGCCUC-GGCc -3'
miRNA:   3'- cucaaCGUCGG-UGU--UGUCGGGGuCCG- -5'
29042 3' -56.7 NC_006146.1 + 98816 0.66 0.886751
Target:  5'- ---gUGCAGCCACAaaugucaccGCuguuGCCuaCCAGGUc -3'
miRNA:   3'- cucaACGUCGGUGU---------UGu---CGG--GGUCCG- -5'
29042 3' -56.7 NC_006146.1 + 84389 0.66 0.886751
Target:  5'- ----gGCGGCCAUcAUGGCCUCcgguAGGCa -3'
miRNA:   3'- cucaaCGUCGGUGuUGUCGGGG----UCCG- -5'
29042 3' -56.7 NC_006146.1 + 51282 0.66 0.886751
Target:  5'- -cGUUGUugGGCCAgGACAguaugaacguGCUCCAGGa -3'
miRNA:   3'- cuCAACG--UCGGUgUUGU----------CGGGGUCCg -5'
29042 3' -56.7 NC_006146.1 + 42822 0.66 0.886062
Target:  5'- aGAGcgUGUagaccaggaucagGGCCuCGAgGGCCgCCAGGCc -3'
miRNA:   3'- -CUCa-ACG-------------UCGGuGUUgUCGG-GGUCCG- -5'
29042 3' -56.7 NC_006146.1 + 103759 0.66 0.879754
Target:  5'- cAGgaGCGGCCA--GCGGCUCCcGGUc -3'
miRNA:   3'- cUCaaCGUCGGUguUGUCGGGGuCCG- -5'
29042 3' -56.7 NC_006146.1 + 157494 0.66 0.879754
Target:  5'- cGGGccUUGCAGaCCugGcugagGCAGUCCguGGCc -3'
miRNA:   3'- -CUC--AACGUC-GGugU-----UGUCGGGguCCG- -5'
29042 3' -56.7 NC_006146.1 + 2286 0.66 0.879754
Target:  5'- uGAGgucaccGgAGCCAggcccuccuucCGACAGUUCCAGGCc -3'
miRNA:   3'- -CUCaa----CgUCGGU-----------GUUGUCGGGGUCCG- -5'
29042 3' -56.7 NC_006146.1 + 130511 0.66 0.872535
Target:  5'- aGGUcuagGguGCUGuCAGCAGCCacaauCCGGGCa -3'
miRNA:   3'- cUCAa---CguCGGU-GUUGUCGG-----GGUCCG- -5'
29042 3' -56.7 NC_006146.1 + 142651 0.66 0.872535
Target:  5'- ---cUGCccAGCCACc-CAGCcucgCCCAGGCg -3'
miRNA:   3'- cucaACG--UCGGUGuuGUCG----GGGUCCG- -5'
29042 3' -56.7 NC_006146.1 + 145728 0.66 0.872535
Target:  5'- ---cUGCccAGCCACc-CAGCcucgCCCAGGCg -3'
miRNA:   3'- cucaACG--UCGGUGuuGUCG----GGGUCCG- -5'
29042 3' -56.7 NC_006146.1 + 148806 0.66 0.872535
Target:  5'- ---cUGCccAGCCACc-CAGCcucgCCCAGGCg -3'
miRNA:   3'- cucaACG--UCGGUGuuGUCG----GGGUCCG- -5'
29042 3' -56.7 NC_006146.1 + 151884 0.66 0.872535
Target:  5'- ---cUGCccAGCCACc-CAGCcucgCCCAGGCg -3'
miRNA:   3'- cucaACG--UCGGUGuuGUCG----GGGUCCG- -5'
29042 3' -56.7 NC_006146.1 + 66419 0.66 0.872535
Target:  5'- ---cUGCGGCCuuuuccacucagACAuCAGCCCCAG-Ca -3'
miRNA:   3'- cucaACGUCGG------------UGUuGUCGGGGUCcG- -5'
29042 3' -56.7 NC_006146.1 + 74625 0.66 0.872535
Target:  5'- ---gUGCAGCCugAuGCGGCgCCCccuguaguAGGCc -3'
miRNA:   3'- cucaACGUCGGugU-UGUCG-GGG--------UCCG- -5'
29042 3' -56.7 NC_006146.1 + 99610 0.66 0.872535
Target:  5'- gGAGga--AGCaCACAACuGCCCaCGGGUg -3'
miRNA:   3'- -CUCaacgUCG-GUGUUGuCGGG-GUCCG- -5'
29042 3' -56.7 NC_006146.1 + 76690 0.66 0.872535
Target:  5'- ---cUGCGGCUACAcCGGCaCCUucGGCg -3'
miRNA:   3'- cucaACGUCGGUGUuGUCG-GGGu-CCG- -5'
29042 3' -56.7 NC_006146.1 + 128531 0.66 0.872535
Target:  5'- -cGUUGCGGCuCACGACcGCCacgaagacguCCcGGCu -3'
miRNA:   3'- cuCAACGUCG-GUGUUGuCGG----------GGuCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.