miRNA display CGI


Results 1 - 20 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29042 5' -55.7 NC_006146.1 + 18240 0.66 0.94051
Target:  5'- -gGCCUGGGGgagcuCAuGGAcaGCCUgGGGa -3'
miRNA:   3'- gaUGGACCCUau---GUcCCU--CGGAgUCC- -5'
29042 5' -55.7 NC_006146.1 + 51829 0.66 0.935755
Target:  5'- --cCCgGGGcgGCguggAGGGGGgCUCGGGg -3'
miRNA:   3'- gauGGaCCCuaUG----UCCCUCgGAGUCC- -5'
29042 5' -55.7 NC_006146.1 + 89350 0.66 0.930764
Target:  5'- aCUACgaGGaGGcUGCAGuGGAGuCCUCGGa -3'
miRNA:   3'- -GAUGgaCC-CU-AUGUC-CCUC-GGAGUCc -5'
29042 5' -55.7 NC_006146.1 + 169548 0.66 0.930764
Target:  5'- -gACCcgagGGGcgaGCGGGGGGCUUCcccGGGg -3'
miRNA:   3'- gaUGGa---CCCua-UGUCCCUCGGAG---UCC- -5'
29042 5' -55.7 NC_006146.1 + 167683 0.66 0.930764
Target:  5'- -gACCcgagGGGcgaGCGGGGGGCUUCcccGGGg -3'
miRNA:   3'- gaUGGa---CCCua-UGUCCCUCGGAG---UCC- -5'
29042 5' -55.7 NC_006146.1 + 842 0.66 0.930764
Target:  5'- -cACCuUGGGGcAUAGGG-GCCcUAGGa -3'
miRNA:   3'- gaUGG-ACCCUaUGUCCCuCGGaGUCC- -5'
29042 5' -55.7 NC_006146.1 + 168616 0.66 0.930764
Target:  5'- -gACCcgagGGGcgaGCGGGGGGCUUCcccGGGg -3'
miRNA:   3'- gaUGGa---CCCua-UGUCCCUCGGAG---UCC- -5'
29042 5' -55.7 NC_006146.1 + 59116 0.66 0.925537
Target:  5'- aUGCCaGGGG---AGGGAGCUaUAGGg -3'
miRNA:   3'- gAUGGaCCCUaugUCCCUCGGaGUCC- -5'
29042 5' -55.7 NC_006146.1 + 52996 0.66 0.920075
Target:  5'- cCUGCCggccGuGGccGCGGGGgucgaugaccAGCCUCGGGu -3'
miRNA:   3'- -GAUGGa---C-CCuaUGUCCC----------UCGGAGUCC- -5'
29042 5' -55.7 NC_006146.1 + 75258 0.66 0.920075
Target:  5'- -gGCgUGGGGUGCAcGGGgauGGCCg-AGGa -3'
miRNA:   3'- gaUGgACCCUAUGU-CCC---UCGGagUCC- -5'
29042 5' -55.7 NC_006146.1 + 119949 0.66 0.916684
Target:  5'- gCUGCCggaggucucgguggGGGGU-CAGGaGAcGCCUCGGa -3'
miRNA:   3'- -GAUGGa-------------CCCUAuGUCC-CU-CGGAGUCc -5'
29042 5' -55.7 NC_006146.1 + 156709 0.66 0.914377
Target:  5'- cCUGCCaGGGGgcaaAGGGGGCuCagAGGg -3'
miRNA:   3'- -GAUGGaCCCUaug-UCCCUCG-GagUCC- -5'
29042 5' -55.7 NC_006146.1 + 153632 0.66 0.914377
Target:  5'- cCUGCCaGGGGgcaaAGGGGGCuCagAGGg -3'
miRNA:   3'- -GAUGGaCCCUaug-UCCCUCG-GagUCC- -5'
29042 5' -55.7 NC_006146.1 + 37115 0.66 0.914377
Target:  5'- uCUGCaugGGGAUGguGGGuagcuGCCUCGa- -3'
miRNA:   3'- -GAUGga-CCCUAUguCCCu----CGGAGUcc -5'
29042 5' -55.7 NC_006146.1 + 150554 0.66 0.914377
Target:  5'- cCUGCCaGGGGgcaaAGGGGGCuCagAGGg -3'
miRNA:   3'- -GAUGGaCCCUaug-UCCCUCG-GagUCC- -5'
29042 5' -55.7 NC_006146.1 + 147476 0.66 0.914377
Target:  5'- cCUGCCaGGGGgcaaAGGGGGCuCagAGGg -3'
miRNA:   3'- -GAUGGaCCCUaug-UCCCUCG-GagUCC- -5'
29042 5' -55.7 NC_006146.1 + 141320 0.66 0.914377
Target:  5'- cCUGCCaGGGGgcaaAGGGGGCuCagAGGg -3'
miRNA:   3'- -GAUGGaCCCUaug-UCCCUCG-GagUCC- -5'
29042 5' -55.7 NC_006146.1 + 144398 0.66 0.914377
Target:  5'- cCUGCCaGGGGgcaaAGGGGGCuCagAGGg -3'
miRNA:   3'- -GAUGGaCCCUaug-UCCCUCG-GagUCC- -5'
29042 5' -55.7 NC_006146.1 + 170089 0.67 0.908445
Target:  5'- -gGCCggcGGGAgggGCcggcgccgcagGGGGGGCCggCGGGg -3'
miRNA:   3'- gaUGGa--CCCUa--UG-----------UCCCUCGGa-GUCC- -5'
29042 5' -55.7 NC_006146.1 + 125608 0.67 0.908445
Target:  5'- --cUCUGGGucuugguCuGGcGGGCCUCAGGg -3'
miRNA:   3'- gauGGACCCuau----GuCC-CUCGGAGUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.