miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2906 3' -55.2 NC_001493.1 + 108445 0.66 0.927911
Target:  5'- cGAgauUGGCCCUGGAaauaUCGggu-CGCCUc -3'
miRNA:   3'- -CUau-ACCGGGGCCU----GGCauuuGCGGG- -5'
2906 3' -55.2 NC_001493.1 + 42066 0.66 0.927911
Target:  5'- uGAUAggggcGGCCCCGGGaCGU----GCCCc -3'
miRNA:   3'- -CUAUa----CCGGGGCCUgGCAuuugCGGG- -5'
2906 3' -55.2 NC_001493.1 + 62243 0.66 0.922474
Target:  5'- ----cGGCUCCgGGAUCGUu--CGCCg -3'
miRNA:   3'- cuauaCCGGGG-CCUGGCAuuuGCGGg -5'
2906 3' -55.2 NC_001493.1 + 78291 0.66 0.922474
Target:  5'- -cUcgGGCCCCaGACUGgcacGGGCGUCg -3'
miRNA:   3'- cuAuaCCGGGGcCUGGCa---UUUGCGGg -5'
2906 3' -55.2 NC_001493.1 + 121135 0.66 0.916794
Target:  5'- ------aCCCCGGGCUGgc-GCGCCUg -3'
miRNA:   3'- cuauaccGGGGCCUGGCauuUGCGGG- -5'
2906 3' -55.2 NC_001493.1 + 5581 0.66 0.916794
Target:  5'- ------aCCCCGGGCUGgc-GCGCCUg -3'
miRNA:   3'- cuauaccGGGGCCUGGCauuUGCGGG- -5'
2906 3' -55.2 NC_001493.1 + 87805 0.66 0.916794
Target:  5'- ----aGGUCCCGGGguagauCCGguccucguACGCCCc -3'
miRNA:   3'- cuauaCCGGGGCCU------GGCauu-----UGCGGG- -5'
2906 3' -55.2 NC_001493.1 + 62055 0.66 0.916794
Target:  5'- uGAUA--GCCCCGG-UCGU---CGCCCg -3'
miRNA:   3'- -CUAUacCGGGGCCuGGCAuuuGCGGG- -5'
2906 3' -55.2 NC_001493.1 + 75748 0.66 0.916794
Target:  5'- --gAUGGCaccgcucaCCGGGCUGUuuuuCGCUCg -3'
miRNA:   3'- cuaUACCGg-------GGCCUGGCAuuu-GCGGG- -5'
2906 3' -55.2 NC_001493.1 + 118803 0.66 0.910873
Target:  5'- ----gGGCaCCGG-CCGUGAcgaGCCCg -3'
miRNA:   3'- cuauaCCGgGGCCuGGCAUUug-CGGG- -5'
2906 3' -55.2 NC_001493.1 + 3249 0.66 0.910873
Target:  5'- ----gGGCaCCGG-CCGUGAcgaGCCCg -3'
miRNA:   3'- cuauaCCGgGGCCuGGCAUUug-CGGG- -5'
2906 3' -55.2 NC_001493.1 + 29757 0.66 0.910873
Target:  5'- --gGUGGUCCCgaGGGUCGUcu-CGCCCu -3'
miRNA:   3'- cuaUACCGGGG--CCUGGCAuuuGCGGG- -5'
2906 3' -55.2 NC_001493.1 + 18624 0.67 0.898312
Target:  5'- ----gGGCCCCGaguacgacGGCCGcgucGAGCGaCCCg -3'
miRNA:   3'- cuauaCCGGGGC--------CUGGCa---UUUGC-GGG- -5'
2906 3' -55.2 NC_001493.1 + 15465 0.67 0.898312
Target:  5'- ----gGGCCCCgccGGuCCGUuuAUGCCg -3'
miRNA:   3'- cuauaCCGGGG---CCuGGCAuuUGCGGg -5'
2906 3' -55.2 NC_001493.1 + 128929 0.67 0.897004
Target:  5'- ----cGGUUCCGGACCGcuccccccuUGCCCc -3'
miRNA:   3'- cuauaCCGGGGCCUGGCauuu-----GCGGG- -5'
2906 3' -55.2 NC_001493.1 + 13375 0.67 0.897004
Target:  5'- ----cGGUUCCGGACCGcuccccccuUGCCCc -3'
miRNA:   3'- cuauaCCGGGGCCUGGCauuu-----GCGGG- -5'
2906 3' -55.2 NC_001493.1 + 134110 0.67 0.891678
Target:  5'- -----cGCCCCGuGGCCGUGGACGg-- -3'
miRNA:   3'- cuauacCGGGGC-CUGGCAUUUGCggg -5'
2906 3' -55.2 NC_001493.1 + 118398 0.67 0.891678
Target:  5'- --gAUGaCCCCGGGUCGaucGCGCCCu -3'
miRNA:   3'- cuaUACcGGGGCCUGGCauuUGCGGG- -5'
2906 3' -55.2 NC_001493.1 + 2844 0.67 0.891678
Target:  5'- --gAUGaCCCCGGGUCGaucGCGCCCu -3'
miRNA:   3'- cuaUACcGGGGCCUGGCauuUGCGGG- -5'
2906 3' -55.2 NC_001493.1 + 18555 0.67 0.891678
Target:  5'- -----cGCCCCGuGGCCGUGGACGg-- -3'
miRNA:   3'- cuauacCGGGGC-CUGGCAUUUGCggg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.