miRNA display CGI


Results 1 - 20 of 153 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29061 3' -64 NC_006146.1 + 122634 0.66 0.587947
Target:  5'- cGGGGcccucuuucgcgccaGGACGGCgGCG-GGGGCCc--- -3'
miRNA:   3'- -CCCC---------------UCUGCCGgCGCgUCCCGGacuu -5'
29061 3' -64 NC_006146.1 + 96825 0.66 0.574478
Target:  5'- uGGuGGGGACGGgCGgGCAgguuGGGCCc--- -3'
miRNA:   3'- -CC-CCUCUGCCgGCgCGU----CCCGGacuu -5'
29061 3' -64 NC_006146.1 + 107768 0.66 0.574477
Target:  5'- aGGcGGAGAUGGCCaGCGguccCAGGGgcaCCUGc- -3'
miRNA:   3'- -CC-CCUCUGCCGG-CGC----GUCCC---GGACuu -5'
29061 3' -64 NC_006146.1 + 169163 0.66 0.5649
Target:  5'- cGGGAGG-GGCCgGCGCcugcagggGGGGCCggcgGGg -3'
miRNA:   3'- cCCCUCUgCCGG-CGCG--------UCCCGGa---CUu -5'
29061 3' -64 NC_006146.1 + 168231 0.66 0.5649
Target:  5'- cGGGAGG-GGCCgGCGCcugcagggGGGGCCggcgGGg -3'
miRNA:   3'- cCCCUCUgCCGG-CGCG--------UCCCGGa---CUu -5'
29061 3' -64 NC_006146.1 + 41610 0.66 0.5649
Target:  5'- cGGGGGGcUGGUC-CGCuGGGCCcGGg -3'
miRNA:   3'- -CCCCUCuGCCGGcGCGuCCCGGaCUu -5'
29061 3' -64 NC_006146.1 + 57365 0.66 0.5649
Target:  5'- aGGGAGGCuGCgGCGguGGcGCCg--- -3'
miRNA:   3'- cCCCUCUGcCGgCGCguCC-CGGacuu -5'
29061 3' -64 NC_006146.1 + 167299 0.66 0.5649
Target:  5'- cGGGAGG-GGCCgGCGCcugcagggGGGGCCggcgGGg -3'
miRNA:   3'- cCCCUCUgCCGG-CGCG--------UCCCGGa---CUu -5'
29061 3' -64 NC_006146.1 + 75703 0.66 0.5649
Target:  5'- uGGaGGAG-CuGCaGCGCAGGGaCCUGGc -3'
miRNA:   3'- -CC-CCUCuGcCGgCGCGUCCC-GGACUu -5'
29061 3' -64 NC_006146.1 + 143015 0.66 0.562034
Target:  5'- cGGGGAG-CGGCUgggauggggaaGCcggaguccagagggGCccgAGGGCCUGAAa -3'
miRNA:   3'- -CCCCUCuGCCGG-----------CG--------------CG---UCCCGGACUU- -5'
29061 3' -64 NC_006146.1 + 146093 0.66 0.562034
Target:  5'- cGGGGAG-CGGCUgggauggggaaGCcggaguccagagggGCccgAGGGCCUGAAa -3'
miRNA:   3'- -CCCCUCuGCCGG-----------CG--------------CG---UCCCGGACUU- -5'
29061 3' -64 NC_006146.1 + 149171 0.66 0.562034
Target:  5'- cGGGGAG-CGGCUgggauggggaaGCcggaguccagagggGCccgAGGGCCUGAAa -3'
miRNA:   3'- -CCCCUCuGCCGG-----------CG--------------CG---UCCCGGACUU- -5'
29061 3' -64 NC_006146.1 + 152249 0.66 0.562034
Target:  5'- cGGGGAG-CGGCUgggauggggaaGCcggaguccagagggGCccgAGGGCCUGAAa -3'
miRNA:   3'- -CCCCUCuGCCGG-----------CG--------------CG---UCCCGGACUU- -5'
29061 3' -64 NC_006146.1 + 155327 0.66 0.562034
Target:  5'- cGGGGAG-CGGCUgggauggggaaGCcggaguccagagggGCccgAGGGCCUGAAa -3'
miRNA:   3'- -CCCCUCuGCCGG-----------CG--------------CG---UCCCGGACUU- -5'
29061 3' -64 NC_006146.1 + 158406 0.66 0.562034
Target:  5'- cGGGGAG-CGGCUgggauggggaaGCcggaguccagagggGCccgAGGGCCUGAAa -3'
miRNA:   3'- -CCCCUCuGCCGG-----------CG--------------CG---UCCCGGACUU- -5'
29061 3' -64 NC_006146.1 + 110897 0.66 0.555364
Target:  5'- cGGGGAcGgGGCCGCGUu-GGCCUu-- -3'
miRNA:   3'- -CCCCUcUgCCGGCGCGucCCGGAcuu -5'
29061 3' -64 NC_006146.1 + 170095 0.66 0.554413
Target:  5'- cGGGAGG-GGCCgGCGCcgcagggGGGGCCggcgGGg -3'
miRNA:   3'- cCCCUCUgCCGG-CGCG-------UCCCGGa---CUu -5'
29061 3' -64 NC_006146.1 + 46055 0.66 0.552513
Target:  5'- -aGGGGACGcagcgagugccauaGCUGCuGCAGGGCCUcGGGg -3'
miRNA:   3'- ccCCUCUGC--------------CGGCG-CGUCCCGGA-CUU- -5'
29061 3' -64 NC_006146.1 + 102471 0.66 0.545876
Target:  5'- -aGGAGcCGGCCGCGgcguuCAGGGUCUc-- -3'
miRNA:   3'- ccCCUCuGCCGGCGC-----GUCCCGGAcuu -5'
29061 3' -64 NC_006146.1 + 33020 0.66 0.536441
Target:  5'- cGGGGAcccccuGcCGGCCcgGgGCGGGGCCcgGGAc -3'
miRNA:   3'- -CCCCU------CuGCCGG--CgCGUCCCGGa-CUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.