miRNA display CGI


Results 1 - 20 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29065 3' -56.7 NC_006146.1 + 15885 0.67 0.854779
Target:  5'- uGCCGGAGGgcUCgCugGCCucgaGCCAgcaacUUCUg -3'
miRNA:   3'- uCGGCCUCCa-AG-GugCGG----UGGU-----AAGG- -5'
29065 3' -56.7 NC_006146.1 + 102824 0.66 0.890582
Target:  5'- cGCgCGGGGGcUCUGCGCUugCucgcgCCg -3'
miRNA:   3'- uCG-GCCUCCaAGGUGCGGugGuaa--GG- -5'
29065 3' -56.7 NC_006146.1 + 66107 0.67 0.883844
Target:  5'- gGGCCGGGGGagCUACGggGCCGUg-- -3'
miRNA:   3'- -UCGGCCUCCaaGGUGCggUGGUAagg -5'
29065 3' -56.7 NC_006146.1 + 23422 0.67 0.883844
Target:  5'- uGCCGGAGGggcaguaCCACaagcuccgGCUGCCcgUCUc -3'
miRNA:   3'- uCGGCCUCCaa-----GGUG--------CGGUGGuaAGG- -5'
29065 3' -56.7 NC_006146.1 + 99469 0.67 0.87689
Target:  5'- gAGCCGGGGGcaaCUAagGUCACCAccaUCCu -3'
miRNA:   3'- -UCGGCCUCCaa-GGUg-CGGUGGUa--AGG- -5'
29065 3' -56.7 NC_006146.1 + 124869 0.67 0.869725
Target:  5'- -cCUGGAGGgcCC-CGUCGCC-UUCCa -3'
miRNA:   3'- ucGGCCUCCaaGGuGCGGUGGuAAGG- -5'
29065 3' -56.7 NC_006146.1 + 121217 0.67 0.862352
Target:  5'- aGGgUGGAGGaggaCgACGCCGCCAUagCCc -3'
miRNA:   3'- -UCgGCCUCCaa--GgUGCGGUGGUAa-GG- -5'
29065 3' -56.7 NC_006146.1 + 27630 0.67 0.862352
Target:  5'- uGGCCagGGAaGUUCCgggccaGCGUCACCGggCCa -3'
miRNA:   3'- -UCGG--CCUcCAAGG------UGCGGUGGUaaGG- -5'
29065 3' -56.7 NC_006146.1 + 127261 0.67 0.862352
Target:  5'- -aCUGGAGcGUUCCAC-CCACCGgcUCa -3'
miRNA:   3'- ucGGCCUC-CAAGGUGcGGUGGUaaGG- -5'
29065 3' -56.7 NC_006146.1 + 168257 0.66 0.890582
Target:  5'- gGGCUGGAuGGUcCC-CGCCguguggacgaaGCCGUgcUCCa -3'
miRNA:   3'- -UCGGCCU-CCAaGGuGCGG-----------UGGUA--AGG- -5'
29065 3' -56.7 NC_006146.1 + 113509 0.66 0.890582
Target:  5'- cGGCCGGGcacggucgcGGggCCagcccaccgGCGCCACCg--CCg -3'
miRNA:   3'- -UCGGCCU---------CCaaGG---------UGCGGUGGuaaGG- -5'
29065 3' -56.7 NC_006146.1 + 11535 0.66 0.897101
Target:  5'- gAGCUGGcGGUcagCUACGCCcccGCCAUgCUg -3'
miRNA:   3'- -UCGGCCuCCAa--GGUGCGG---UGGUAaGG- -5'
29065 3' -56.7 NC_006146.1 + 110256 0.66 0.915303
Target:  5'- aAGCCaGGAGa-UCUugGCCugCAgagCCc -3'
miRNA:   3'- -UCGG-CCUCcaAGGugCGGugGUaa-GG- -5'
29065 3' -56.7 NC_006146.1 + 14680 0.66 0.915303
Target:  5'- cGGCCGaGGGGgcCCGCGucuccugcaaCCACCuggcggUCCc -3'
miRNA:   3'- -UCGGC-CUCCaaGGUGC----------GGUGGua----AGG- -5'
29065 3' -56.7 NC_006146.1 + 15025 0.66 0.914729
Target:  5'- uGCCagGGAGGggcgCCugGCCagggcccGCCGggCCu -3'
miRNA:   3'- uCGG--CCUCCaa--GGugCGG-------UGGUaaGG- -5'
29065 3' -56.7 NC_006146.1 + 41771 0.66 0.909463
Target:  5'- cGCCGGAGGccCUGCGCC-CgGgcgCCc -3'
miRNA:   3'- uCGGCCUCCaaGGUGCGGuGgUaa-GG- -5'
29065 3' -56.7 NC_006146.1 + 33246 0.66 0.909463
Target:  5'- -uCCGGGGGUgggggcUCCACGaacCCGCUugccUUCCa -3'
miRNA:   3'- ucGGCCUCCA------AGGUGC---GGUGGu---AAGG- -5'
29065 3' -56.7 NC_006146.1 + 127382 0.66 0.90585
Target:  5'- cGCCccucguGGAGGUgucuuggggcugggCCcCGCCGCCGgagCCg -3'
miRNA:   3'- uCGG------CCUCCAa-------------GGuGCGGUGGUaa-GG- -5'
29065 3' -56.7 NC_006146.1 + 72031 0.66 0.89774
Target:  5'- gAGUgGGuGGUgacucggcgcaggcaCCcCGCCGCCAUUCUu -3'
miRNA:   3'- -UCGgCCuCCAa--------------GGuGCGGUGGUAAGG- -5'
29065 3' -56.7 NC_006146.1 + 47396 0.66 0.897101
Target:  5'- gGGuuGGAGcg-UCugGCCGCCAUgCUg -3'
miRNA:   3'- -UCggCCUCcaaGGugCGGUGGUAaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.