miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2907 5' -54.5 NC_001493.1 + 62957 0.66 0.946741
Target:  5'- --gGGGGCGacCGGC--ACCGUGAccACCa -3'
miRNA:   3'- cgaCCCCGUc-GCUGuaUGGCACU--UGG- -5'
2907 5' -54.5 NC_001493.1 + 63119 0.66 0.946741
Target:  5'- --gGGGGCGacCGGC--ACCGUGAccACCa -3'
miRNA:   3'- cgaCCCCGUc-GCUGuaUGGCACU--UGG- -5'
2907 5' -54.5 NC_001493.1 + 62873 0.66 0.946741
Target:  5'- --gGGGGCGacCGGC--ACCGUGAccACCa -3'
miRNA:   3'- cgaCCCCGUc-GCUGuaUGGCACU--UGG- -5'
2907 5' -54.5 NC_001493.1 + 11219 0.66 0.946741
Target:  5'- uGCUGaGGCGGCG-CAUGgUGcUGGACa -3'
miRNA:   3'- -CGACcCCGUCGCuGUAUgGC-ACUUGg -5'
2907 5' -54.5 NC_001493.1 + 87033 0.66 0.946741
Target:  5'- cGCUGcGGGUguGGUGACAUACuCGguaAACa -3'
miRNA:   3'- -CGAC-CCCG--UCGCUGUAUG-GCac-UUGg -5'
2907 5' -54.5 NC_001493.1 + 126773 0.66 0.946741
Target:  5'- uGCUGaGGCGGCG-CAUGgUGcUGGACa -3'
miRNA:   3'- -CGACcCCGUCGCuGUAUgGC-ACUUGg -5'
2907 5' -54.5 NC_001493.1 + 47452 0.66 0.942219
Target:  5'- -aUGGGG-GGaGGCAUgACCGUGGACa -3'
miRNA:   3'- cgACCCCgUCgCUGUA-UGGCACUUGg -5'
2907 5' -54.5 NC_001493.1 + 71686 0.66 0.942219
Target:  5'- cGCgaucacGGCGGUcuugGACAUgugguuaccGCCGUGGACCg -3'
miRNA:   3'- -CGacc---CCGUCG----CUGUA---------UGGCACUUGG- -5'
2907 5' -54.5 NC_001493.1 + 93363 0.66 0.941754
Target:  5'- aGCUcgGGGGUucGGgGACAUgcuccauggaucuGCCaUGAGCCu -3'
miRNA:   3'- -CGA--CCCCG--UCgCUGUA-------------UGGcACUUGG- -5'
2907 5' -54.5 NC_001493.1 + 26432 0.66 0.937456
Target:  5'- --aGGGGUAGCGACucACUGac-GCCa -3'
miRNA:   3'- cgaCCCCGUCGCUGuaUGGCacuUGG- -5'
2907 5' -54.5 NC_001493.1 + 88191 0.66 0.936966
Target:  5'- --cGGGGUaccggcuGGCGAaucACCGgUGGACCg -3'
miRNA:   3'- cgaCCCCG-------UCGCUguaUGGC-ACUUGG- -5'
2907 5' -54.5 NC_001493.1 + 91185 0.66 0.927733
Target:  5'- cCUGGGGguGaccaauguguauauCGACGggaccgaccagccccUcACCGUGAACCu -3'
miRNA:   3'- cGACCCCguC--------------GCUGU---------------A-UGGCACUUGG- -5'
2907 5' -54.5 NC_001493.1 + 5324 0.66 0.927197
Target:  5'- gGCgGGGGCAccCGugGgcACCGUGA-CCg -3'
miRNA:   3'- -CGaCCCCGUc-GCugUa-UGGCACUuGG- -5'
2907 5' -54.5 NC_001493.1 + 120878 0.66 0.927197
Target:  5'- gGCgGGGGCAccCGugGgcACCGUGA-CCg -3'
miRNA:   3'- -CGaCCCCGUc-GCugUa-UGGCACUuGG- -5'
2907 5' -54.5 NC_001493.1 + 82769 0.67 0.90997
Target:  5'- cGUUGGGGCuGGaUGAUAaGaaGUGAACCc -3'
miRNA:   3'- -CGACCCCG-UC-GCUGUaUggCACUUGG- -5'
2907 5' -54.5 NC_001493.1 + 90716 0.67 0.90997
Target:  5'- cUUGaGGUAGCGGCugaucAgCGUGAACCa -3'
miRNA:   3'- cGACcCCGUCGCUGua---UgGCACUUGG- -5'
2907 5' -54.5 NC_001493.1 + 36616 0.67 0.90997
Target:  5'- uGCUGGuGGUGGcCGugGgGCUGUGggUg -3'
miRNA:   3'- -CGACC-CCGUC-GCugUaUGGCACuuGg -5'
2907 5' -54.5 NC_001493.1 + 113673 0.67 0.903742
Target:  5'- cGC-GGGGCuuGCaaccgaGACAUAUCG-GGACCu -3'
miRNA:   3'- -CGaCCCCGu-CG------CUGUAUGGCaCUUGG- -5'
2907 5' -54.5 NC_001493.1 + 14906 0.67 0.903106
Target:  5'- --gGGGGCAGgGgggaaggGCuucGCCGUGAGCg -3'
miRNA:   3'- cgaCCCCGUCgC-------UGua-UGGCACUUGg -5'
2907 5' -54.5 NC_001493.1 + 130460 0.67 0.903106
Target:  5'- --gGGGGCAGgGgggaaggGCuucGCCGUGAGCg -3'
miRNA:   3'- cgaCCCCGUCgC-------UGua-UGGCACUUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.