miRNA display CGI


Results 1 - 20 of 161 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29077 3' -55 NC_006146.1 + 137721 0.65 0.949733
Target:  5'- aGGCCAGgaCCGagcggcggcgcGGCGgUGCCCAg-- -3'
miRNA:   3'- cCCGGUCaaGGU-----------CUGUgACGGGUaug -5'
29077 3' -55 NC_006146.1 + 144396 0.65 0.949733
Target:  5'- uGGGUguGUggggucCCAGGCAa-GCCCAcACa -3'
miRNA:   3'- -CCCGguCAa-----GGUCUGUgaCGGGUaUG- -5'
29077 3' -55 NC_006146.1 + 140701 0.65 0.949733
Target:  5'- gGGGCUGGUUCUGGcucCGCUccucaauguGCCCAaggUGCa -3'
miRNA:   3'- -CCCGGUCAAGGUCu--GUGA---------CGGGU---AUG- -5'
29077 3' -55 NC_006146.1 + 99313 0.65 0.949733
Target:  5'- uGGUCAGggCCAGAC-CUGCUg---- -3'
miRNA:   3'- cCCGGUCaaGGUCUGuGACGGguaug -5'
29077 3' -55 NC_006146.1 + 35940 0.66 0.945408
Target:  5'- uGGGUguGUgauguuucggauUCCGGGCugacCUGCCguUGCg -3'
miRNA:   3'- -CCCGguCA------------AGGUCUGu---GACGGguAUG- -5'
29077 3' -55 NC_006146.1 + 165487 0.66 0.945408
Target:  5'- aGGCCAGgauugUCCAGAaggagGCaCCGUAUu -3'
miRNA:   3'- cCCGGUCa----AGGUCUguga-CG-GGUAUG- -5'
29077 3' -55 NC_006146.1 + 108432 0.66 0.945408
Target:  5'- cGGCCAGg--UGGACGCagUGCCCGUcCg -3'
miRNA:   3'- cCCGGUCaagGUCUGUG--ACGGGUAuG- -5'
29077 3' -55 NC_006146.1 + 44391 0.66 0.945408
Target:  5'- gGGGCguGUggggCCGGGCACggcGCCUu--- -3'
miRNA:   3'- -CCCGguCAa---GGUCUGUGa--CGGGuaug -5'
29077 3' -55 NC_006146.1 + 7716 0.66 0.945408
Target:  5'- aGGGgCAGaagCCaAGcCACUGCCCGg-- -3'
miRNA:   3'- -CCCgGUCaa-GG-UCuGUGACGGGUaug -5'
29077 3' -55 NC_006146.1 + 13427 0.66 0.945408
Target:  5'- aGGCCcgc-CCGGucaucACGCUGCCCGUGa -3'
miRNA:   3'- cCCGGucaaGGUC-----UGUGACGGGUAUg -5'
29077 3' -55 NC_006146.1 + 77961 0.66 0.945408
Target:  5'- uGGGCCGGagCCGGugGCcuuggaggUGCCgGUc- -3'
miRNA:   3'- -CCCGGUCaaGGUCugUG--------ACGGgUAug -5'
29077 3' -55 NC_006146.1 + 116059 0.66 0.945408
Target:  5'- cGGCCgccuucaucgAGUUCCAGAUuugGCCCGc-- -3'
miRNA:   3'- cCCGG----------UCAAGGUCUGugaCGGGUaug -5'
29077 3' -55 NC_006146.1 + 12777 0.66 0.945408
Target:  5'- -uGCCGGacCUGGACGCgGCCC-UGCa -3'
miRNA:   3'- ccCGGUCaaGGUCUGUGaCGGGuAUG- -5'
29077 3' -55 NC_006146.1 + 130163 0.66 0.940845
Target:  5'- uGGCCAGccCCAaGCACggGCCCGccUGCc -3'
miRNA:   3'- cCCGGUCaaGGUcUGUGa-CGGGU--AUG- -5'
29077 3' -55 NC_006146.1 + 110114 0.66 0.940845
Target:  5'- uGGCCAGgcagacgCCGGGCAUUaaGCCCcgcACg -3'
miRNA:   3'- cCCGGUCaa-----GGUCUGUGA--CGGGua-UG- -5'
29077 3' -55 NC_006146.1 + 103586 0.66 0.940845
Target:  5'- uGGGCCGGgcUCAG-CGCggacgugGCCCGggaGCu -3'
miRNA:   3'- -CCCGGUCaaGGUCuGUGa------CGGGUa--UG- -5'
29077 3' -55 NC_006146.1 + 8993 0.66 0.940845
Target:  5'- uGGaGCCGGUcUCCcacgGGGCGUUGCCCAa-- -3'
miRNA:   3'- -CC-CGGUCA-AGG----UCUGUGACGGGUaug -5'
29077 3' -55 NC_006146.1 + 9484 0.66 0.940845
Target:  5'- gGGGCCAcacccgCCuGGCACagGCCUAUGa -3'
miRNA:   3'- -CCCGGUcaa---GGuCUGUGa-CGGGUAUg -5'
29077 3' -55 NC_006146.1 + 122564 0.66 0.936044
Target:  5'- uGGCCAGa-CUGGACGCcugGCCCAc-- -3'
miRNA:   3'- cCCGGUCaaGGUCUGUGa--CGGGUaug -5'
29077 3' -55 NC_006146.1 + 75131 0.66 0.936044
Target:  5'- uGGaGCCGGggCCAGuACAgaGUCCAa-- -3'
miRNA:   3'- -CC-CGGUCaaGGUC-UGUgaCGGGUaug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.