miRNA display CGI


Results 1 - 20 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29083 3' -62.1 NC_006146.1 + 124262 0.66 0.704335
Target:  5'- --cUCaGGGAGUacgUCUcgGCCCCCaagGCCCu -3'
miRNA:   3'- aguAGcCCCUCA---GGA--CGGGGGa--CGGG- -5'
29083 3' -62.1 NC_006146.1 + 61446 0.66 0.69478
Target:  5'- cUCGUgGGGGAGcUCCaGCUCuacuaCCUGUCUc -3'
miRNA:   3'- -AGUAgCCCCUC-AGGaCGGG-----GGACGGG- -5'
29083 3' -62.1 NC_006146.1 + 130055 0.66 0.685177
Target:  5'- ---cCGGGcc-UCCaagagcGCCCCCUGCCCc -3'
miRNA:   3'- aguaGCCCcucAGGa-----CGGGGGACGGG- -5'
29083 3' -62.1 NC_006146.1 + 81915 0.66 0.685177
Target:  5'- aCAUaUGGGGAG-CCUcaGCCCCa-GCCa -3'
miRNA:   3'- aGUA-GCCCCUCaGGA--CGGGGgaCGGg -5'
29083 3' -62.1 NC_006146.1 + 91253 0.66 0.685177
Target:  5'- gUCGUCcccauGGGGGGcucgccggCCUGUgaCCCUGUCCc -3'
miRNA:   3'- -AGUAG-----CCCCUCa-------GGACGg-GGGACGGG- -5'
29083 3' -62.1 NC_006146.1 + 33017 0.66 0.685177
Target:  5'- cCA-CGGGGAcccCCUGCCggCCCggggcgggGCCCg -3'
miRNA:   3'- aGUaGCCCCUca-GGACGG--GGGa-------CGGG- -5'
29083 3' -62.1 NC_006146.1 + 32971 0.66 0.674568
Target:  5'- ---aCGGGGcgcgcugGGUCgcggCUGCCCCCggaacccccgGCCCu -3'
miRNA:   3'- aguaGCCCC-------UCAG----GACGGGGGa---------CGGG- -5'
29083 3' -62.1 NC_006146.1 + 54050 0.66 0.66586
Target:  5'- -uGUCGGcGGuGGUCaggGCCCaCCUGgCCg -3'
miRNA:   3'- agUAGCC-CC-UCAGga-CGGG-GGACgGG- -5'
29083 3' -62.1 NC_006146.1 + 105873 0.66 0.654218
Target:  5'- ---cCGGGGAGgcaagauagcggCCagcGCCCCCUuCCCa -3'
miRNA:   3'- aguaGCCCCUCa-----------GGa--CGGGGGAcGGG- -5'
29083 3' -62.1 NC_006146.1 + 33306 0.66 0.646444
Target:  5'- ----aGGGGcacCCgGCCCCCgGCCCg -3'
miRNA:   3'- aguagCCCCucaGGaCGGGGGaCGGG- -5'
29083 3' -62.1 NC_006146.1 + 137955 0.67 0.636717
Target:  5'- uUCAcgGGGGAGgaucgcggCCggGCCuCCCggggGCCCg -3'
miRNA:   3'- -AGUagCCCCUCa-------GGa-CGG-GGGa---CGGG- -5'
29083 3' -62.1 NC_006146.1 + 113681 0.67 0.636717
Target:  5'- --cUCGGGcccGGGcCCgGCCUCCgGCCCg -3'
miRNA:   3'- aguAGCCC---CUCaGGaCGGGGGaCGGG- -5'
29083 3' -62.1 NC_006146.1 + 84243 0.67 0.626986
Target:  5'- cUCGUCcagcuacaagcaaGGGAcacauuuacaaauguGUCCUGCCCagCUGCCCc -3'
miRNA:   3'- -AGUAGc------------CCCU---------------CAGGACGGGg-GACGGG- -5'
29083 3' -62.1 NC_006146.1 + 103405 0.67 0.626986
Target:  5'- -aGUgGGGGGcGUCgUGCuCCCCUcGCUCc -3'
miRNA:   3'- agUAgCCCCU-CAGgACG-GGGGA-CGGG- -5'
29083 3' -62.1 NC_006146.1 + 25888 0.67 0.626986
Target:  5'- aCAUugUGGuGGAGagCUcCUCCCUGCCCa -3'
miRNA:   3'- aGUA--GCC-CCUCagGAcGGGGGACGGG- -5'
29083 3' -62.1 NC_006146.1 + 164328 0.67 0.626986
Target:  5'- gUUGUCGGGGuuUUgUgGCCCgUUGCCCc -3'
miRNA:   3'- -AGUAGCCCCucAGgA-CGGGgGACGGG- -5'
29083 3' -62.1 NC_006146.1 + 45976 0.67 0.61726
Target:  5'- ---cCGGGGcAGcUCCUcGCCCCgCguguagGCCCg -3'
miRNA:   3'- aguaGCCCC-UC-AGGA-CGGGG-Ga-----CGGG- -5'
29083 3' -62.1 NC_006146.1 + 127763 0.67 0.61726
Target:  5'- gUCGUUGGGGAGa-UUGCCCUgCUGCa- -3'
miRNA:   3'- -AGUAGCCCCUCagGACGGGG-GACGgg -5'
29083 3' -62.1 NC_006146.1 + 51838 0.67 0.61726
Target:  5'- gCGUggaGGGGGGcucggggCCUGgCCCgaGCCCg -3'
miRNA:   3'- aGUAg--CCCCUCa------GGACgGGGgaCGGG- -5'
29083 3' -62.1 NC_006146.1 + 589 0.67 0.611428
Target:  5'- ---cCGGGGgcgcggcccggcgccAGcCCUGCCCCCUcuccCCCg -3'
miRNA:   3'- aguaGCCCC---------------UCaGGACGGGGGAc---GGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.