miRNA display CGI


Results 1 - 20 of 331 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29083 5' -51.3 NC_006146.1 + 133809 0.66 0.995224
Target:  5'- gGCAUGCCAacugcucaggggaggGGGugAGGAUggUgGGCCc -3'
miRNA:   3'- -CGUGUGGU---------------UCCugUUCUGuaGgUCGG- -5'
29083 5' -51.3 NC_006146.1 + 123373 0.66 0.994926
Target:  5'- cGCugGCCGGGGGCcccGCAaCCuGGCUg -3'
miRNA:   3'- -CGugUGGUUCCUGuucUGUaGG-UCGG- -5'
29083 5' -51.3 NC_006146.1 + 155012 0.66 0.994926
Target:  5'- uGCugGCuCGAGGccaGCGAGcCcUCCGGCa -3'
miRNA:   3'- -CGugUG-GUUCC---UGUUCuGuAGGUCGg -5'
29083 5' -51.3 NC_006146.1 + 113001 0.66 0.994926
Target:  5'- uGCAUGuCCu-GGACAAGGCGccguUCCAcCCg -3'
miRNA:   3'- -CGUGU-GGuuCCUGUUCUGU----AGGUcGG- -5'
29083 5' -51.3 NC_006146.1 + 57048 0.66 0.994926
Target:  5'- aGC-CGCCAGGGuuGAGGCGggagggGGCCu -3'
miRNA:   3'- -CGuGUGGUUCCugUUCUGUagg---UCGG- -5'
29083 5' -51.3 NC_006146.1 + 167650 0.66 0.994926
Target:  5'- gGCGCguGCCGGGGGCccgGGGGCguGUCCcGCg -3'
miRNA:   3'- -CGUG--UGGUUCCUG---UUCUG--UAGGuCGg -5'
29083 5' -51.3 NC_006146.1 + 62165 0.66 0.994926
Target:  5'- cCACGacuCCGAGGAgGcGGACA-CCAGCa -3'
miRNA:   3'- cGUGU---GGUUCCUgU-UCUGUaGGUCGg -5'
29083 5' -51.3 NC_006146.1 + 4837 0.66 0.994926
Target:  5'- aGCACACCAgcagcauggagGGGAauaGGGGCAggggCgggGGCCa -3'
miRNA:   3'- -CGUGUGGU-----------UCCUg--UUCUGUa---Gg--UCGG- -5'
29083 5' -51.3 NC_006146.1 + 68960 0.66 0.994926
Target:  5'- ---aGCCAgGGGGCAGGGCAg--AGCCg -3'
miRNA:   3'- cgugUGGU-UCCUGUUCUGUaggUCGG- -5'
29083 5' -51.3 NC_006146.1 + 101463 0.66 0.994926
Target:  5'- gGCGCA--GAGGugGGGuCAgcgUCAGCCu -3'
miRNA:   3'- -CGUGUggUUCCugUUCuGUa--GGUCGG- -5'
29083 5' -51.3 NC_006146.1 + 14039 0.66 0.994926
Target:  5'- aGCAgG-CGGGGGCAGGcGCAagcgCCGGCUg -3'
miRNA:   3'- -CGUgUgGUUCCUGUUC-UGUa---GGUCGG- -5'
29083 5' -51.3 NC_006146.1 + 25830 0.66 0.994926
Target:  5'- -gGCACCcucauGAGGAgAu-ACAUCCAGCg -3'
miRNA:   3'- cgUGUGG-----UUCCUgUucUGUAGGUCGg -5'
29083 5' -51.3 NC_006146.1 + 76386 0.66 0.994926
Target:  5'- gGCGCGCCGGGGGaGGGACcgggggcGCCg -3'
miRNA:   3'- -CGUGUGGUUCCUgUUCUGuaggu--CGG- -5'
29083 5' -51.3 NC_006146.1 + 91845 0.66 0.994926
Target:  5'- uGCugGCCGGuGGAaaaAAGACAggugCCuGCa -3'
miRNA:   3'- -CGugUGGUU-CCUg--UUCUGUa---GGuCGg -5'
29083 5' -51.3 NC_006146.1 + 2366 0.66 0.994926
Target:  5'- aGUACgaGCC-GGGAC-AGGCGUCCgcgGGCUu -3'
miRNA:   3'- -CGUG--UGGuUCCUGuUCUGUAGG---UCGG- -5'
29083 5' -51.3 NC_006146.1 + 114728 0.66 0.994113
Target:  5'- -gAUGCCAGGGGCAGaACG--CAGCCu -3'
miRNA:   3'- cgUGUGGUUCCUGUUcUGUagGUCGG- -5'
29083 5' -51.3 NC_006146.1 + 124997 0.66 0.994113
Target:  5'- uCACACUcuucAGGuagccGGCGUCCGGCCc -3'
miRNA:   3'- cGUGUGGu---UCCuguu-CUGUAGGUCGG- -5'
29083 5' -51.3 NC_006146.1 + 109193 0.66 0.994113
Target:  5'- ---gGCCGGGGGCAuguaGGGCAUCagAGCg -3'
miRNA:   3'- cgugUGGUUCCUGU----UCUGUAGg-UCGg -5'
29083 5' -51.3 NC_006146.1 + 137024 0.66 0.994113
Target:  5'- gGCACACCccGGGGAgGAGGCcgggugggGGCCu -3'
miRNA:   3'- -CGUGUGG--UUCCUgUUCUGuagg----UCGG- -5'
29083 5' -51.3 NC_006146.1 + 49758 0.66 0.994113
Target:  5'- cGCGCgGCCcAGGcCcAGACG-CCGGCUg -3'
miRNA:   3'- -CGUG-UGGuUCCuGuUCUGUaGGUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.