miRNA display CGI


Results 41 - 60 of 162 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29085 5' -58 NC_006146.1 + 41025 0.66 0.872551
Target:  5'- gUCGAagaagggcAUCUCCCccccguccgcgGCGgCCCUgGGGGCc -3'
miRNA:   3'- gAGUU--------UAGAGGG-----------UGCgGGGGgCUCCG- -5'
29085 5' -58 NC_006146.1 + 60633 0.66 0.872551
Target:  5'- aUCAcGUCUgCgAUgGCuCCCCCGAGuGCa -3'
miRNA:   3'- gAGUuUAGAgGgUG-CG-GGGGGCUC-CG- -5'
29085 5' -58 NC_006146.1 + 117923 0.66 0.872551
Target:  5'- cCUCGAGaCgcccgCCC-CGCCCCgCGgaGGGCc -3'
miRNA:   3'- -GAGUUUaGa----GGGuGCGGGGgGC--UCCG- -5'
29085 5' -58 NC_006146.1 + 13064 0.66 0.879567
Target:  5'- gCUCGGug--CCCGuC-CCCUCCGGGGCc -3'
miRNA:   3'- -GAGUUuagaGGGU-GcGGGGGGCUCCG- -5'
29085 5' -58 NC_006146.1 + 10120 0.66 0.879567
Target:  5'- -gUggGUCUCaCCcuCGCCCCCgGAcgacaaaguGGCa -3'
miRNA:   3'- gaGuuUAGAG-GGu-GCGGGGGgCU---------CCG- -5'
29085 5' -58 NC_006146.1 + 126122 0.66 0.842497
Target:  5'- -cCAGAUCcccggccuggguUCCC-CGCCCgCCG-GGCc -3'
miRNA:   3'- gaGUUUAG------------AGGGuGCGGGgGGCuCCG- -5'
29085 5' -58 NC_006146.1 + 47940 0.66 0.842497
Target:  5'- ------cCUCCC-CGCCUCCCGcugcguggacAGGCu -3'
miRNA:   3'- gaguuuaGAGGGuGCGGGGGGC----------UCCG- -5'
29085 5' -58 NC_006146.1 + 36200 0.68 0.783203
Target:  5'- uCUCAGA-CaCCUggGCUCCCCGGGaGCg -3'
miRNA:   3'- -GAGUUUaGaGGGugCGGGGGGCUC-CG- -5'
29085 5' -58 NC_006146.1 + 103415 0.68 0.783203
Target:  5'- gUCGug-CUCCCcuCGCUCCuggaCCGGGGCu -3'
miRNA:   3'- gAGUuuaGAGGGu-GCGGGG----GGCUCCG- -5'
29085 5' -58 NC_006146.1 + 122836 0.68 0.783203
Target:  5'- -gCGAGUacguggaCCgCACGCUgCCCGGGGCg -3'
miRNA:   3'- gaGUUUAga-----GG-GUGCGGgGGGCUCCG- -5'
29085 5' -58 NC_006146.1 + 49504 0.67 0.792124
Target:  5'- -gCAGAcUCUCCCggACGUUgaggCCCGAGGCg -3'
miRNA:   3'- gaGUUU-AGAGGG--UGCGGg---GGGCUCCG- -5'
29085 5' -58 NC_006146.1 + 4018 0.67 0.795654
Target:  5'- aCUCAcg-CUCCUccuCGCCCUCCGcuccccccucccgccGGGCu -3'
miRNA:   3'- -GAGUuuaGAGGGu--GCGGGGGGC---------------UCCG- -5'
29085 5' -58 NC_006146.1 + 125946 0.67 0.799162
Target:  5'- gUCGAGUCccccggggccucCCCGCGCCCCUggccacgaGAGGUu -3'
miRNA:   3'- gAGUUUAGa-----------GGGUGCGGGGGg-------CUCCG- -5'
29085 5' -58 NC_006146.1 + 117556 0.67 0.800907
Target:  5'- -cCAAGaC-CUCACGCCgCCCCGcGGCc -3'
miRNA:   3'- gaGUUUaGaGGGUGCGG-GGGGCuCCG- -5'
29085 5' -58 NC_006146.1 + 116415 0.67 0.800907
Target:  5'- --gGAGUCUCCUcccacgACGCCaUCCUGAGGa -3'
miRNA:   3'- gagUUUAGAGGG------UGCGG-GGGGCUCCg -5'
29085 5' -58 NC_006146.1 + 77268 0.67 0.809546
Target:  5'- cCUCAAcGUCUUCUuCGgCCUCCGGGGa -3'
miRNA:   3'- -GAGUU-UAGAGGGuGCgGGGGGCUCCg -5'
29085 5' -58 NC_006146.1 + 102305 0.67 0.809546
Target:  5'- -gCAGAUCgCCCACcuGCaCgCCCgGGGGCa -3'
miRNA:   3'- gaGUUUAGaGGGUG--CG-G-GGGgCUCCG- -5'
29085 5' -58 NC_006146.1 + 116176 0.67 0.809546
Target:  5'- --uGAGUCUCCCcucggcCGCCCugaCCCG-GGCc -3'
miRNA:   3'- gagUUUAGAGGGu-----GCGGG---GGGCuCCG- -5'
29085 5' -58 NC_006146.1 + 127356 0.67 0.815502
Target:  5'- -cCGcGUCUCCUacugcuucuugcgcGCGCCCCUCgugGAGGUg -3'
miRNA:   3'- gaGUuUAGAGGG--------------UGCGGGGGG---CUCCG- -5'
29085 5' -58 NC_006146.1 + 119082 0.67 0.818032
Target:  5'- --------cUCCACGCCgCCCCGGGGa -3'
miRNA:   3'- gaguuuagaGGGUGCGG-GGGGCUCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.