Results 1 - 20 of 162 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29085 | 5' | -58 | NC_006146.1 | + | 113134 | 1.11 | 0.001647 |
Target: 5'- cCUCAAAUCUCCCACGCCCCCCGAGGCu -3' miRNA: 3'- -GAGUUUAGAGGGUGCGGGGGGCUCCG- -5' |
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29085 | 5' | -58 | NC_006146.1 | + | 66854 | 0.79 | 0.22007 |
Target: 5'- gUCAuaGAUCUCCCcagcguccaggGCGCCCCCCG-GGUc -3' miRNA: 3'- gAGU--UUAGAGGG-----------UGCGGGGGGCuCCG- -5' |
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29085 | 5' | -58 | NC_006146.1 | + | 37916 | 0.78 | 0.247712 |
Target: 5'- aUCAccgcaccgcGGUCUCCaC-CGCCCCCCGAGGa -3' miRNA: 3'- gAGU---------UUAGAGG-GuGCGGGGGGCUCCg -5' |
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29085 | 5' | -58 | NC_006146.1 | + | 80270 | 0.78 | 0.265641 |
Target: 5'- gCUCAGGUCUggacacCCUAC-CUCCCCGGGGCg -3' miRNA: 3'- -GAGUUUAGA------GGGUGcGGGGGGCUCCG- -5' |
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29085 | 5' | -58 | NC_006146.1 | + | 150713 | 0.78 | 0.271846 |
Target: 5'- ------cCUCCUGCGCCCCCgGGGGCc -3' miRNA: 3'- gaguuuaGAGGGUGCGGGGGgCUCCG- -5' |
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29085 | 5' | -58 | NC_006146.1 | + | 120621 | 0.76 | 0.347851 |
Target: 5'- -aCAGAUCUCCUGCGCCCCUu--GGCc -3' miRNA: 3'- gaGUUUAGAGGGUGCGGGGGgcuCCG- -5' |
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29085 | 5' | -58 | NC_006146.1 | + | 42357 | 0.76 | 0.325705 |
Target: 5'- gCUCcaGGAUCUCCCGCGCCgCCagggugggcgaGGGGCg -3' miRNA: 3'- -GAG--UUUAGAGGGUGCGGgGGg----------CUCCG- -5' |
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29085 | 5' | -58 | NC_006146.1 | + | 3018 | 0.76 | 0.340351 |
Target: 5'- --aGGGUC-CCCGgGCCgCCCCGGGGCu -3' miRNA: 3'- gagUUUAGaGGGUgCGG-GGGGCUCCG- -5' |
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29085 | 5' | -58 | NC_006146.1 | + | 1154 | 0.76 | 0.340351 |
Target: 5'- --aGGGUC-CCCGgGCCgCCCCGGGGCu -3' miRNA: 3'- gagUUUAGaGGGUgCGG-GGGGCUCCG- -5' |
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29085 | 5' | -58 | NC_006146.1 | + | 2086 | 0.76 | 0.340351 |
Target: 5'- --aGGGUC-CCCGgGCCgCCCCGGGGCu -3' miRNA: 3'- gagUUUAGaGGGUgCGG-GGGGCUCCG- -5' |
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29085 | 5' | -58 | NC_006146.1 | + | 8770 | 0.76 | 0.347851 |
Target: 5'- aUUAAAUCUCCCACcgugggacgGCCCCCC-AGuGCa -3' miRNA: 3'- gAGUUUAGAGGGUG---------CGGGGGGcUC-CG- -5' |
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29085 | 5' | -58 | NC_006146.1 | + | 117441 | 0.74 | 0.412001 |
Target: 5'- -aCGAggCaCCCGCGCCUCCCG-GGCa -3' miRNA: 3'- gaGUUuaGaGGGUGCGGGGGGCuCCG- -5' |
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29085 | 5' | -58 | NC_006146.1 | + | 129825 | 0.73 | 0.482973 |
Target: 5'- cCUCGc-UgUCCCugGCCucccuccaCCCCGAGGCc -3' miRNA: 3'- -GAGUuuAgAGGGugCGG--------GGGGCUCCG- -5' |
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29085 | 5' | -58 | NC_006146.1 | + | 14866 | 0.73 | 0.455631 |
Target: 5'- cCUCAc-UCUagcccUCCAgGCCCUCCGAGGCc -3' miRNA: 3'- -GAGUuuAGA-----GGGUgCGGGGGGCUCCG- -5' |
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29085 | 5' | -58 | NC_006146.1 | + | 20952 | 0.73 | 0.498814 |
Target: 5'- ------aCUCCCACGCCugggcgccccucaaCCCCGAGGg -3' miRNA: 3'- gaguuuaGAGGGUGCGG--------------GGGGCUCCg -5' |
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29085 | 5' | -58 | NC_006146.1 | + | 121948 | 0.73 | 0.482973 |
Target: 5'- -cCAAucgCUCCCACaaCUCCCUGAGGCu -3' miRNA: 3'- gaGUUua-GAGGGUGc-GGGGGGCUCCG- -5' |
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29085 | 5' | -58 | NC_006146.1 | + | 27177 | 0.73 | 0.455631 |
Target: 5'- cCUCAc-UCUagcccUCCAgGCCCUCCGAGGCc -3' miRNA: 3'- -GAGUuuAGA-----GGGUgCGGGGGGCUCCG- -5' |
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29085 | 5' | -58 | NC_006146.1 | + | 24099 | 0.73 | 0.455631 |
Target: 5'- cCUCAc-UCUagcccUCCAgGCCCUCCGAGGCc -3' miRNA: 3'- -GAGUuuAGA-----GGGUgCGGGGGGCUCCG- -5' |
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29085 | 5' | -58 | NC_006146.1 | + | 21021 | 0.73 | 0.455631 |
Target: 5'- cCUCAc-UCUagcccUCCAgGCCCUCCGAGGCc -3' miRNA: 3'- -GAGUuuAGA-----GGGUgCGGGGGGCUCCG- -5' |
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29085 | 5' | -58 | NC_006146.1 | + | 19695 | 0.73 | 0.452942 |
Target: 5'- -gCAAAUCUCCUGCGUCCUCUgguccacgggggagGAGGCc -3' miRNA: 3'- gaGUUUAGAGGGUGCGGGGGG--------------CUCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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