Results 1 - 20 of 162 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29085 | 5' | -58 | NC_006146.1 | + | 77268 | 0.67 | 0.809546 |
Target: 5'- cCUCAAcGUCUUCUuCGgCCUCCGGGGa -3' miRNA: 3'- -GAGUU-UAGAGGGuGCgGGGGGCUCCg -5' |
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29085 | 5' | -58 | NC_006146.1 | + | 40406 | 0.66 | 0.857912 |
Target: 5'- ------cCUCCCGCgggggcaaaguaGCCaCCCGGGGCg -3' miRNA: 3'- gaguuuaGAGGGUG------------CGGgGGGCUCCG- -5' |
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29085 | 5' | -58 | NC_006146.1 | + | 20169 | 0.66 | 0.849527 |
Target: 5'- --gAGAUCcCUCGCcucuuugcagaggGCCCCCgGGGGCg -3' miRNA: 3'- gagUUUAGaGGGUG-------------CGGGGGgCUCCG- -5' |
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29085 | 5' | -58 | NC_006146.1 | + | 126122 | 0.66 | 0.842497 |
Target: 5'- -cCAGAUCcccggccuggguUCCC-CGCCCgCCG-GGCc -3' miRNA: 3'- gaGUUUAG------------AGGGuGCGGGgGGCuCCG- -5' |
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29085 | 5' | -58 | NC_006146.1 | + | 47940 | 0.66 | 0.842497 |
Target: 5'- ------cCUCCC-CGCCUCCCGcugcguggacAGGCu -3' miRNA: 3'- gaguuuaGAGGGuGCGGGGGGC----------UCCG- -5' |
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29085 | 5' | -58 | NC_006146.1 | + | 119082 | 0.67 | 0.818032 |
Target: 5'- --------cUCCACGCCgCCCCGGGGa -3' miRNA: 3'- gaguuuagaGGGUGCGG-GGGGCUCCg -5' |
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29085 | 5' | -58 | NC_006146.1 | + | 127356 | 0.67 | 0.815502 |
Target: 5'- -cCGcGUCUCCUacugcuucuugcgcGCGCCCCUCgugGAGGUg -3' miRNA: 3'- gaGUuUAGAGGG--------------UGCGGGGGG---CUCCG- -5' |
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29085 | 5' | -58 | NC_006146.1 | + | 116176 | 0.67 | 0.809546 |
Target: 5'- --uGAGUCUCCCcucggcCGCCCugaCCCG-GGCc -3' miRNA: 3'- gagUUUAGAGGGu-----GCGGG---GGGCuCCG- -5' |
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29085 | 5' | -58 | NC_006146.1 | + | 102305 | 0.67 | 0.809546 |
Target: 5'- -gCAGAUCgCCCACcuGCaCgCCCgGGGGCa -3' miRNA: 3'- gaGUUUAGaGGGUG--CG-G-GGGgCUCCG- -5' |
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29085 | 5' | -58 | NC_006146.1 | + | 42700 | 0.66 | 0.857912 |
Target: 5'- ----cGUCUggCCCggcgccgcgGCGCCCCCCuGGGCc -3' miRNA: 3'- gaguuUAGA--GGG---------UGCGGGGGGcUCCG- -5' |
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29085 | 5' | -58 | NC_006146.1 | + | 124611 | 0.66 | 0.865331 |
Target: 5'- gCUCGAG-CUCgaC-CGCCgCCaCCGGGGCu -3' miRNA: 3'- -GAGUUUaGAGg-GuGCGG-GG-GGCUCCG- -5' |
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29085 | 5' | -58 | NC_006146.1 | + | 129469 | 0.66 | 0.865331 |
Target: 5'- -cCAGAUCUaggagCCUAgaaaacucgggUGCCCCCC-AGGCg -3' miRNA: 3'- gaGUUUAGA-----GGGU-----------GCGGGGGGcUCCG- -5' |
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29085 | 5' | -58 | NC_006146.1 | + | 10120 | 0.66 | 0.879567 |
Target: 5'- -gUggGUCUCaCCcuCGCCCCCgGAcgacaaaguGGCa -3' miRNA: 3'- gaGuuUAGAG-GGu-GCGGGGGgCU---------CCG- -5' |
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29085 | 5' | -58 | NC_006146.1 | + | 13064 | 0.66 | 0.879567 |
Target: 5'- gCUCGGug--CCCGuC-CCCUCCGGGGCc -3' miRNA: 3'- -GAGUUuagaGGGU-GcGGGGGGCUCCG- -5' |
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29085 | 5' | -58 | NC_006146.1 | + | 117923 | 0.66 | 0.872551 |
Target: 5'- cCUCGAGaCgcccgCCC-CGCCCCgCGgaGGGCc -3' miRNA: 3'- -GAGUUUaGa----GGGuGCGGGGgGC--UCCG- -5' |
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29085 | 5' | -58 | NC_006146.1 | + | 60633 | 0.66 | 0.872551 |
Target: 5'- aUCAcGUCUgCgAUgGCuCCCCCGAGuGCa -3' miRNA: 3'- gAGUuUAGAgGgUG-CG-GGGGGCUC-CG- -5' |
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29085 | 5' | -58 | NC_006146.1 | + | 41025 | 0.66 | 0.872551 |
Target: 5'- gUCGAagaagggcAUCUCCCccccguccgcgGCGgCCCUgGGGGCc -3' miRNA: 3'- gAGUU--------UAGAGGG-----------UGCgGGGGgCUCCG- -5' |
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29085 | 5' | -58 | NC_006146.1 | + | 108484 | 0.66 | 0.872551 |
Target: 5'- uUCugcuUCUgCCugGCCUCCgaCGAGGUc -3' miRNA: 3'- gAGuuu-AGAgGGugCGGGGG--GCUCCG- -5' |
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29085 | 5' | -58 | NC_006146.1 | + | 105699 | 0.66 | 0.872551 |
Target: 5'- -cCGGG-CUCCCAgGgCCCCCaGAGcGCc -3' miRNA: 3'- gaGUUUaGAGGGUgCgGGGGG-CUC-CG- -5' |
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29085 | 5' | -58 | NC_006146.1 | + | 140028 | 0.66 | 0.871838 |
Target: 5'- gUCAGGUUcuuguguUCCCACGUCCCUgCGuucuGGUg -3' miRNA: 3'- gAGUUUAG-------AGGGUGCGGGGG-GCu---CCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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