Results 21 - 40 of 66 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29091 | 3' | -57.7 | NC_006146.1 | + | 137789 | 0.66 | 0.87024 |
Target: 5'- gGCCUGGUCCGccggauccgcuucGGGGGUC-CgCCgGUCc -3' miRNA: 3'- -UGGACUAGGC-------------CCUCUAGuGgGGgUAG- -5' |
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29091 | 3' | -57.7 | NC_006146.1 | + | 137053 | 0.68 | 0.771124 |
Target: 5'- gGCCUGGgguUCCGGG-GAcCACaCCCC-UCc -3' miRNA: 3'- -UGGACU---AGGCCCuCUaGUG-GGGGuAG- -5' |
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29091 | 3' | -57.7 | NC_006146.1 | + | 136760 | 0.66 | 0.856098 |
Target: 5'- cGCCgGGgcUCCGGGAGGcccggccgcgaUCcuCCCCCGUg -3' miRNA: 3'- -UGGaCU--AGGCCCUCU-----------AGu-GGGGGUAg -5' |
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29091 | 3' | -57.7 | NC_006146.1 | + | 136724 | 0.69 | 0.704046 |
Target: 5'- gGCCcagGGUCCggcuGGGGGcgCACCCCCc-- -3' miRNA: 3'- -UGGa--CUAGG----CCCUCuaGUGGGGGuag -5' |
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29091 | 3' | -57.7 | NC_006146.1 | + | 125046 | 0.67 | 0.824067 |
Target: 5'- cACC-GGUCCcaaaaggggcucGGGGGAcgcCAUCCCCGUCu -3' miRNA: 3'- -UGGaCUAGG------------CCCUCUa--GUGGGGGUAG- -5' |
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29091 | 3' | -57.7 | NC_006146.1 | + | 123314 | 0.68 | 0.761831 |
Target: 5'- cGCCgagugGAUCCGGGAcGUCugCggggCCGUCa -3' miRNA: 3'- -UGGa----CUAGGCCCUcUAGugGg---GGUAG- -5' |
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29091 | 3' | -57.7 | NC_006146.1 | + | 121630 | 0.66 | 0.863632 |
Target: 5'- uGCCUGGaCC---AGAUCGCCCCCuUCu -3' miRNA: 3'- -UGGACUaGGcccUCUAGUGGGGGuAG- -5' |
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29091 | 3' | -57.7 | NC_006146.1 | + | 121399 | 0.69 | 0.684222 |
Target: 5'- gGCCUcaacGUCCGGGAGAgUCugCCCaugaccaaCAUCa -3' miRNA: 3'- -UGGAc---UAGGCCCUCU-AGugGGG--------GUAG- -5' |
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29091 | 3' | -57.7 | NC_006146.1 | + | 121355 | 0.66 | 0.870964 |
Target: 5'- gGCCUGG-CCGGcGuGGccucCGCCCCCAg- -3' miRNA: 3'- -UGGACUaGGCC-CuCUa---GUGGGGGUag -5' |
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29091 | 3' | -57.7 | NC_006146.1 | + | 120721 | 1.09 | 0.002072 |
Target: 5'- cACCUGAUCCGGGAGAUCACCCCCAUCg -3' miRNA: 3'- -UGGACUAGGCCCUCUAGUGGGGGUAG- -5' |
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29091 | 3' | -57.7 | NC_006146.1 | + | 120069 | 0.67 | 0.832346 |
Target: 5'- -gCUGcgCCGGGaAGAcggaGCCCCCAa- -3' miRNA: 3'- ugGACuaGGCCC-UCUag--UGGGGGUag -5' |
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29091 | 3' | -57.7 | NC_006146.1 | + | 117250 | 0.67 | 0.832346 |
Target: 5'- gGCCgGggCCaGGGGGGUCGgcagguucCCCaCCAUCa -3' miRNA: 3'- -UGGaCuaGG-CCCUCUAGU--------GGG-GGUAG- -5' |
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29091 | 3' | -57.7 | NC_006146.1 | + | 117132 | 0.66 | 0.863632 |
Target: 5'- cCCUcGUCCGGcGAGAccuccgccCGCCgCCCGUCu -3' miRNA: 3'- uGGAcUAGGCC-CUCUa-------GUGG-GGGUAG- -5' |
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29091 | 3' | -57.7 | NC_006146.1 | + | 116910 | 0.72 | 0.514212 |
Target: 5'- cCCUGAgggaaagCCGGGGGAUCgcagaccACCCCCu-- -3' miRNA: 3'- uGGACUa------GGCCCUCUAG-------UGGGGGuag -5' |
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29091 | 3' | -57.7 | NC_006146.1 | + | 113634 | 0.67 | 0.82155 |
Target: 5'- aGCUUGAcggugcUCCGGGGGAUgGCCuugcugaccacgggCCCGUg -3' miRNA: 3'- -UGGACU------AGGCCCUCUAgUGG--------------GGGUAg -5' |
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29091 | 3' | -57.7 | NC_006146.1 | + | 113620 | 0.67 | 0.806141 |
Target: 5'- cGCCUGccCCGGcGcuGGAuguugucUCGCCCCCGUUg -3' miRNA: 3'- -UGGACuaGGCC-C--UCU-------AGUGGGGGUAG- -5' |
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29091 | 3' | -57.7 | NC_006146.1 | + | 111304 | 0.66 | 0.856098 |
Target: 5'- gACCUGA--CGGGGGAcgcCGCCCuCCAgaUCg -3' miRNA: 3'- -UGGACUagGCCCUCUa--GUGGG-GGU--AG- -5' |
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29091 | 3' | -57.7 | NC_006146.1 | + | 104229 | 0.69 | 0.723636 |
Target: 5'- -gCUGGgcuUCCGGGucAUCACCCCCc-- -3' miRNA: 3'- ugGACU---AGGCCCucUAGUGGGGGuag -5' |
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29091 | 3' | -57.7 | NC_006146.1 | + | 104220 | 0.7 | 0.634076 |
Target: 5'- aGCCgagGGUUCaGGGAGGUgcccCGCCCCCcUCa -3' miRNA: 3'- -UGGa--CUAGG-CCCUCUA----GUGGGGGuAG- -5' |
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29091 | 3' | -57.7 | NC_006146.1 | + | 104116 | 0.72 | 0.534518 |
Target: 5'- cGCCUGGgcCCGGuGuccAGGUCGCaCCCCGUCu -3' miRNA: 3'- -UGGACUa-GGCC-C---UCUAGUG-GGGGUAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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