miRNA display CGI


Results 1 - 20 of 323 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29106 5' -57.6 NC_006146.1 + 46975 0.65 0.903705
Target:  5'- gGCCCgGCCGCCg----CCAGGAauugcgcccgucggACCGGc -3'
miRNA:   3'- -CGGG-UGGUGGucagaGGUCCU--------------UGGCC- -5'
29106 5' -57.6 NC_006146.1 + 120236 0.66 0.901253
Target:  5'- cGCCCugagcacgauagACCAUCugcuggugacgguGGUCUuggagcagggucucaUCAGGAGCCGGu -3'
miRNA:   3'- -CGGG------------UGGUGG-------------UCAGA---------------GGUCCUUGGCC- -5'
29106 5' -57.6 NC_006146.1 + 13978 0.66 0.899391
Target:  5'- aGCCCgucagcGCCGCCA--C-CCAGGccucGGCCGGg -3'
miRNA:   3'- -CGGG------UGGUGGUcaGaGGUCC----UUGGCC- -5'
29106 5' -57.6 NC_006146.1 + 29638 0.66 0.899391
Target:  5'- cGCCCACaCGuCCAGgggucCUCgAGGAAgaGGc -3'
miRNA:   3'- -CGGGUG-GU-GGUCa----GAGgUCCUUggCC- -5'
29106 5' -57.6 NC_006146.1 + 14248 0.66 0.899391
Target:  5'- cGCCCACaCGuCCAGgggucCUCgAGGAAgaGGc -3'
miRNA:   3'- -CGGGUG-GU-GGUCa----GAGgUCCUUggCC- -5'
29106 5' -57.6 NC_006146.1 + 23482 0.66 0.899391
Target:  5'- cGCCCACaCGuCCAGgggucCUCgAGGAAgaGGc -3'
miRNA:   3'- -CGGGUG-GU-GGUCa----GAGgUCCUUggCC- -5'
29106 5' -57.6 NC_006146.1 + 20404 0.66 0.899391
Target:  5'- cGCCCACaCGuCCAGgggucCUCgAGGAAgaGGc -3'
miRNA:   3'- -CGGGUG-GU-GGUCa----GAGgUCCUUggCC- -5'
29106 5' -57.6 NC_006146.1 + 26560 0.66 0.899391
Target:  5'- cGCCCACaCGuCCAGgggucCUCgAGGAAgaGGc -3'
miRNA:   3'- -CGGGUG-GU-GGUCa----GAGgUCCUUggCC- -5'
29106 5' -57.6 NC_006146.1 + 17326 0.66 0.899391
Target:  5'- cGCCCACaCGuCCAGgggucCUCgAGGAAgaGGc -3'
miRNA:   3'- -CGGGUG-GU-GGUCa----GAGgUCCUUggCC- -5'
29106 5' -57.6 NC_006146.1 + 34056 0.66 0.899391
Target:  5'- uGCCgGCCGggGGUC-CCGuggcacGGGGCCGGg -3'
miRNA:   3'- -CGGgUGGUggUCAGaGGU------CCUUGGCC- -5'
29106 5' -57.6 NC_006146.1 + 49569 0.66 0.899391
Target:  5'- gGCCCAgCaugGCCucgauGUcCUCCAGGAugACgCGGa -3'
miRNA:   3'- -CGGGUgG---UGGu----CA-GAGGUCCU--UG-GCC- -5'
29106 5' -57.6 NC_006146.1 + 104167 0.66 0.899391
Target:  5'- uGCCCACCcCCuGaCUCCGaGAACaUGGa -3'
miRNA:   3'- -CGGGUGGuGGuCaGAGGUcCUUG-GCC- -5'
29106 5' -57.6 NC_006146.1 + 80917 0.66 0.899391
Target:  5'- uGCuCCACCACCuccucuugAGUuccCUCCAGcaccACCGGc -3'
miRNA:   3'- -CG-GGUGGUGG--------UCA---GAGGUCcu--UGGCC- -5'
29106 5' -57.6 NC_006146.1 + 142652 0.66 0.899391
Target:  5'- uGCCCAgCCAcCCAGcCUcgcCCAGGcGCCu- -3'
miRNA:   3'- -CGGGU-GGU-GGUCaGA---GGUCCuUGGcc -5'
29106 5' -57.6 NC_006146.1 + 145729 0.66 0.899391
Target:  5'- uGCCCAgCCAcCCAGcCUcgcCCAGGcGCCu- -3'
miRNA:   3'- -CGGGU-GGU-GGUCaGA---GGUCCuUGGcc -5'
29106 5' -57.6 NC_006146.1 + 148807 0.66 0.899391
Target:  5'- uGCCCAgCCAcCCAGcCUcgcCCAGGcGCCu- -3'
miRNA:   3'- -CGGGU-GGU-GGUCaGA---GGUCCuUGGcc -5'
29106 5' -57.6 NC_006146.1 + 151885 0.66 0.899391
Target:  5'- uGCCCAgCCAcCCAGcCUcgcCCAGGcGCCu- -3'
miRNA:   3'- -CGGGU-GGU-GGUCaGA---GGUCCuUGGcc -5'
29106 5' -57.6 NC_006146.1 + 154963 0.66 0.899391
Target:  5'- uGCCCAgCCAcCCAGcCUcgcCCAGGcGCCu- -3'
miRNA:   3'- -CGGGU-GGU-GGUCaGA---GGUCCuUGGcc -5'
29106 5' -57.6 NC_006146.1 + 8919 0.66 0.899391
Target:  5'- aUCCACCguggaGCCGGUCUCCcacGGGGCg-- -3'
miRNA:   3'- cGGGUGG-----UGGUCAGAGGu--CCUUGgcc -5'
29106 5' -57.6 NC_006146.1 + 8985 0.66 0.899391
Target:  5'- aUCCACCguggaGCCGGUCUCCcacGGGGCg-- -3'
miRNA:   3'- cGGGUGG-----UGGUCAGAGGu--CCUUGgcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.