miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29108 3' -63.1 NC_006146.1 + 166530 0.66 0.672924
Target:  5'- cGGCcuGG-GGAGcCCGCGGG-GCcGUGg -3'
miRNA:   3'- cCCG--CCaCCUCuGGCGCCCaCGcCAC- -5'
29108 3' -63.1 NC_006146.1 + 12873 0.66 0.672924
Target:  5'- uGGGUGGcUGGgcAGGCCGggucuCGGGUcugggggucuGUGGUGg -3'
miRNA:   3'- -CCCGCC-ACC--UCUGGC-----GCCCA----------CGCCAC- -5'
29108 3' -63.1 NC_006146.1 + 28262 0.66 0.672924
Target:  5'- uGGGUGGcUGGgcAGGCCGggucuCGGGUcugggggucuGUGGUGg -3'
miRNA:   3'- -CCCGCC-ACC--UCUGGC-----GCCCA----------CGCCAC- -5'
29108 3' -63.1 NC_006146.1 + 34018 0.66 0.672924
Target:  5'- gGGGgGGUcGGGGCagGCGGGcGUGGUc -3'
miRNA:   3'- -CCCgCCAcCUCUGg-CGCCCaCGCCAc -5'
29108 3' -63.1 NC_006146.1 + 22106 0.66 0.672924
Target:  5'- uGGGUGGcUGGgcAGGCCGggucuCGGGUcugggggucuGUGGUGg -3'
miRNA:   3'- -CCCGCC-ACC--UCUGGC-----GCCCA----------CGCCAC- -5'
29108 3' -63.1 NC_006146.1 + 19028 0.66 0.672924
Target:  5'- uGGGUGGcUGGgcAGGCCGggucuCGGGUcugggggucuGUGGUGg -3'
miRNA:   3'- -CCCGCC-ACC--UCUGGC-----GCCCA----------CGCCAC- -5'
29108 3' -63.1 NC_006146.1 + 25184 0.66 0.672924
Target:  5'- uGGGUGGcUGGgcAGGCCGggucuCGGGUcugggggucuGUGGUGg -3'
miRNA:   3'- -CCCGCC-ACC--UCUGGC-----GCCCA----------CGCCAC- -5'
29108 3' -63.1 NC_006146.1 + 89997 0.66 0.663371
Target:  5'- aGGUGGUGGAG-CaggaGUGGGUuCGGg- -3'
miRNA:   3'- cCCGCCACCUCuGg---CGCCCAcGCCac -5'
29108 3' -63.1 NC_006146.1 + 2825 0.66 0.657629
Target:  5'- aGGCGGUGGcggaaugucacgccaGGAgCG-GGGUGcCGGUu -3'
miRNA:   3'- cCCGCCACC---------------UCUgGCgCCCAC-GCCAc -5'
29108 3' -63.1 NC_006146.1 + 44705 0.66 0.653797
Target:  5'- cGGCGGUGGccguGGCCcccGCuGGccggccugaUGCGGUGg -3'
miRNA:   3'- cCCGCCACCu---CUGG---CGcCC---------ACGCCAC- -5'
29108 3' -63.1 NC_006146.1 + 122620 0.66 0.648045
Target:  5'- gGGGCGGaGGAGGCCGgGGcccucuuucgcgccaGgacgGCGGc- -3'
miRNA:   3'- -CCCGCCaCCUCUGGCgCC---------------Ca---CGCCac -5'
29108 3' -63.1 NC_006146.1 + 26253 0.66 0.644208
Target:  5'- uGGCcagaGGUGGGGGCa-CGGGUGgCGGa- -3'
miRNA:   3'- cCCG----CCACCUCUGgcGCCCAC-GCCac -5'
29108 3' -63.1 NC_006146.1 + 10665 0.66 0.63461
Target:  5'- uGGGaCGG-GGAGGCC-CGGGgcgauacccGCGGg- -3'
miRNA:   3'- -CCC-GCCaCCUCUGGcGCCCa--------CGCCac -5'
29108 3' -63.1 NC_006146.1 + 15951 0.66 0.63461
Target:  5'- uGGGUGGcUGGgcAGGCCGgucuCGGGUcugggggucuGUGGUGg -3'
miRNA:   3'- -CCCGCC-ACC--UCUGGC----GCCCA----------CGCCAC- -5'
29108 3' -63.1 NC_006146.1 + 40258 0.66 0.63269
Target:  5'- cGGGUGGgauccguaguagGGAGG-CGCGGGcggagGCGGg- -3'
miRNA:   3'- -CCCGCCa-----------CCUCUgGCGCCCa----CGCCac -5'
29108 3' -63.1 NC_006146.1 + 51412 0.66 0.62501
Target:  5'- gGGGCugaGGaguUGGAGugCGCGGGacuagaggUGUGGa- -3'
miRNA:   3'- -CCCG---CC---ACCUCugGCGCCC--------ACGCCac -5'
29108 3' -63.1 NC_006146.1 + 131553 0.66 0.62501
Target:  5'- uGGUGGUGG-GACgC-CGGGUGguuUGGUGa -3'
miRNA:   3'- cCCGCCACCuCUG-GcGCCCAC---GCCAC- -5'
29108 3' -63.1 NC_006146.1 + 92266 0.67 0.615416
Target:  5'- gGGGCGGgcccggccUGGGGcuGCUGCuGGGggGCGGg- -3'
miRNA:   3'- -CCCGCC--------ACCUC--UGGCG-CCCa-CGCCac -5'
29108 3' -63.1 NC_006146.1 + 92206 0.67 0.615416
Target:  5'- gGGGCGGgcccggccUGGGGcuGCUGCuGGGggGCGGg- -3'
miRNA:   3'- -CCCGCC--------ACCUC--UGGCG-CCCa-CGCCac -5'
29108 3' -63.1 NC_006146.1 + 92027 0.67 0.615416
Target:  5'- gGGGCGGgcccggccUGGGGcuGCUGCuGGGggGCGGg- -3'
miRNA:   3'- -CCCGCC--------ACCUC--UGGCG-CCCa-CGCCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.