miRNA display CGI


Results 1 - 20 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29113 3' -60.3 NC_006146.1 + 23772 0.66 0.786656
Target:  5'- gCC-GAGAauGGcGGCCUGCGCGuCUGGGg -3'
miRNA:   3'- -GGaUUCUccCC-CCGGACGUGC-GGCUC- -5'
29113 3' -60.3 NC_006146.1 + 86465 0.66 0.786656
Target:  5'- gCUuuGAGGGGGcaGCCUGgGCuuUGAGg -3'
miRNA:   3'- gGAuuCUCCCCC--CGGACgUGcgGCUC- -5'
29113 3' -60.3 NC_006146.1 + 168368 0.66 0.777774
Target:  5'- uCCcGGGGcGGGGGGUCgggcggGCAUGCucCGGGg -3'
miRNA:   3'- -GGaUUCU-CCCCCCGGa-----CGUGCG--GCUC- -5'
29113 3' -60.3 NC_006146.1 + 93305 0.66 0.777774
Target:  5'- cUCUGAGAGGGGGuuCCUGUccaugaccACGCaguugGAGu -3'
miRNA:   3'- -GGAUUCUCCCCCc-GGACG--------UGCGg----CUC- -5'
29113 3' -60.3 NC_006146.1 + 170231 0.66 0.777774
Target:  5'- uCCcGGGGcGGGGGGUCgggcggGCAUGCucCGGGg -3'
miRNA:   3'- -GGaUUCU-CCCCCCGGa-----CGUGCG--GCUC- -5'
29113 3' -60.3 NC_006146.1 + 167436 0.66 0.777774
Target:  5'- uCCcGGGGcGGGGGGUCgggcggGCAUGCucCGGGg -3'
miRNA:   3'- -GGaUUCU-CCCCCCGGa-----CGUGCG--GCUC- -5'
29113 3' -60.3 NC_006146.1 + 169300 0.66 0.777774
Target:  5'- uCCcGGGGcGGGGGGUCgggcggGCAUGCucCGGGg -3'
miRNA:   3'- -GGaUUCU-CCCCCCGGa-----CGUGCG--GCUC- -5'
29113 3' -60.3 NC_006146.1 + 51182 0.66 0.777774
Target:  5'- ---uGGAaGGGGGUCUGCGgGCUGGc -3'
miRNA:   3'- ggauUCUcCCCCCGGACGUgCGGCUc -5'
29113 3' -60.3 NC_006146.1 + 1226 0.66 0.777774
Target:  5'- aCCc--GGGGGcGGGCCacGCGCGCCc-- -3'
miRNA:   3'- -GGauuCUCCC-CCCGGa-CGUGCGGcuc -5'
29113 3' -60.3 NC_006146.1 + 2158 0.66 0.777774
Target:  5'- aCCc--GGGGGcGGGCCacGCGCGCCc-- -3'
miRNA:   3'- -GGauuCUCCC-CCCGGa-CGUGCGGcuc -5'
29113 3' -60.3 NC_006146.1 + 3090 0.66 0.777774
Target:  5'- aCCc--GGGGGcGGGCCacGCGCGCCc-- -3'
miRNA:   3'- -GGauuCUCCC-CCCGGa-CGUGCGGcuc -5'
29113 3' -60.3 NC_006146.1 + 3367 0.66 0.768771
Target:  5'- gCCUcccAGGAGaGGGGCCggggGCGCGgcCCGGc -3'
miRNA:   3'- -GGA---UUCUCcCCCCGGa---CGUGC--GGCUc -5'
29113 3' -60.3 NC_006146.1 + 2435 0.66 0.768771
Target:  5'- gCCUcccAGGAGaGGGGCCggggGCGCGgcCCGGc -3'
miRNA:   3'- -GGA---UUCUCcCCCCGGa---CGUGC--GGCUc -5'
29113 3' -60.3 NC_006146.1 + 1503 0.66 0.768771
Target:  5'- gCCUcccAGGAGaGGGGCCggggGCGCGgcCCGGc -3'
miRNA:   3'- -GGA---UUCUCcCCCCGGa---CGUGC--GGCUc -5'
29113 3' -60.3 NC_006146.1 + 572 0.66 0.768771
Target:  5'- gCCUcccAGGAGaGGGGCCggggGCGCGgcCCGGc -3'
miRNA:   3'- -GGA---UUCUCcCCCCGGa---CGUGC--GGCUc -5'
29113 3' -60.3 NC_006146.1 + 125725 0.66 0.768771
Target:  5'- --gAGGAGGGGaGcGCC-GC-CGCCGAu -3'
miRNA:   3'- ggaUUCUCCCC-C-CGGaCGuGCGGCUc -5'
29113 3' -60.3 NC_006146.1 + 57065 0.66 0.759656
Target:  5'- ----cGGGaGGGGGCCUG-ACGCgGAu -3'
miRNA:   3'- ggauuCUC-CCCCCGGACgUGCGgCUc -5'
29113 3' -60.3 NC_006146.1 + 170581 0.66 0.759656
Target:  5'- gCCggGAGAaugacagcuGGGcGuGGCgaGCGCGCCGGGc -3'
miRNA:   3'- -GGa-UUCU---------CCC-C-CCGgaCGUGCGGCUC- -5'
29113 3' -60.3 NC_006146.1 + 100282 0.66 0.750436
Target:  5'- uCCUAGcGGGGGcuggcaGGCCUGCAcCGCgaucaGAGu -3'
miRNA:   3'- -GGAUUcUCCCC------CCGGACGU-GCGg----CUC- -5'
29113 3' -60.3 NC_006146.1 + 168926 0.66 0.741119
Target:  5'- uUCUcGGAGacgaGGGGGCCcgugGaCAgGCCGAGu -3'
miRNA:   3'- -GGAuUCUC----CCCCCGGa---C-GUgCGGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.