miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29116 5' -62.5 NC_006146.1 + 103610 0.66 0.653931
Target:  5'- -gCCCGGGagcuGGCGGAGcucgcaagcuggcacGCGgaggagGGGCCCGc -3'
miRNA:   3'- uaGGGUCC----CCGCCUU---------------CGCa-----CCUGGGU- -5'
29116 5' -62.5 NC_006146.1 + 135968 0.66 0.650008
Target:  5'- -cCCCGGGGuGCuGggGUGggggaUGGGCUCAg -3'
miRNA:   3'- uaGGGUCCC-CGcCuuCGC-----ACCUGGGU- -5'
29116 5' -62.5 NC_006146.1 + 64245 0.66 0.650008
Target:  5'- --gCC-GGGGCGGGaggGGCGUGG-CUCGc -3'
miRNA:   3'- uagGGuCCCCGCCU---UCGCACCuGGGU- -5'
29116 5' -62.5 NC_006146.1 + 32138 0.66 0.650008
Target:  5'- -cCCCGGGGuGCuGggGUGggggaUGGGCUCAg -3'
miRNA:   3'- uaGGGUCCC-CGcCuuCGC-----ACCUGGGU- -5'
29116 5' -62.5 NC_006146.1 + 166471 0.66 0.649026
Target:  5'- uUCUCAGGGaaguaGCGuGGuagcuagaaucgcAGCGUGGugCCAg -3'
miRNA:   3'- uAGGGUCCC-----CGC-CU-------------UCGCACCugGGU- -5'
29116 5' -62.5 NC_006146.1 + 168135 0.66 0.64019
Target:  5'- gGUCCCgGGGGGCGGc-GCGcGGccuuCCCc -3'
miRNA:   3'- -UAGGG-UCCCCGCCuuCGCaCCu---GGGu -5'
29116 5' -62.5 NC_006146.1 + 169999 0.66 0.64019
Target:  5'- gGUCCCgGGGGGCGGc-GCGcGGccuuCCCc -3'
miRNA:   3'- -UAGGG-UCCCCGCCuuCGCaCCu---GGGu -5'
29116 5' -62.5 NC_006146.1 + 169067 0.66 0.64019
Target:  5'- gGUCCCgGGGGGCGGc-GCGcGGccuuCCCc -3'
miRNA:   3'- -UAGGG-UCCCCGCCuuCGCaCCu---GGGu -5'
29116 5' -62.5 NC_006146.1 + 167203 0.66 0.64019
Target:  5'- gGUCCCgGGGGGCGGc-GCGcGGccuuCCCc -3'
miRNA:   3'- -UAGGG-UCCCCGCCuuCGCaCCu---GGGu -5'
29116 5' -62.5 NC_006146.1 + 72071 0.66 0.630367
Target:  5'- uUCCCGuuaacGGGUGGAaugguGGCGUGGaACCUc -3'
miRNA:   3'- uAGGGUc----CCCGCCU-----UCGCACC-UGGGu -5'
29116 5' -62.5 NC_006146.1 + 142143 0.66 0.630367
Target:  5'- cUCCCAGuGGCuGuuGCGUGG-CCCu -3'
miRNA:   3'- uAGGGUCcCCGcCuuCGCACCuGGGu -5'
29116 5' -62.5 NC_006146.1 + 4867 0.66 0.630367
Target:  5'- ---gCAGGGGCGGggGCcacaGGcACCCc -3'
miRNA:   3'- uaggGUCCCCGCCuuCGca--CC-UGGGu -5'
29116 5' -62.5 NC_006146.1 + 154197 0.66 0.620545
Target:  5'- -aCCCcGGGGCGu---CGUGGACCUg -3'
miRNA:   3'- uaGGGuCCCCGCcuucGCACCUGGGu -5'
29116 5' -62.5 NC_006146.1 + 112108 0.66 0.620545
Target:  5'- -gCUCGGGGGUGGAGGUggugcuggugGUGGcCUCGg -3'
miRNA:   3'- uaGGGUCCCCGCCUUCG----------CACCuGGGU- -5'
29116 5' -62.5 NC_006146.1 + 41607 0.66 0.610731
Target:  5'- -gCCCGGGGGgcUGGuccGC-UGGGCCCGg -3'
miRNA:   3'- uaGGGUCCCC--GCCuu-CGcACCUGGGU- -5'
29116 5' -62.5 NC_006146.1 + 41263 0.66 0.600932
Target:  5'- uUCCC--GGGCGGAGcacgcgcccGCGgaGGACCCGg -3'
miRNA:   3'- uAGGGucCCCGCCUU---------CGCa-CCUGGGU- -5'
29116 5' -62.5 NC_006146.1 + 44947 0.66 0.600932
Target:  5'- --gCCAGGGGCgcggGGAGGCcccgggGGACUCGa -3'
miRNA:   3'- uagGGUCCCCG----CCUUCGca----CCUGGGU- -5'
29116 5' -62.5 NC_006146.1 + 128435 0.66 0.600932
Target:  5'- gAUCCgGGccgcagaccGGGCGGGAGgGggagcgGGACCUAa -3'
miRNA:   3'- -UAGGgUC---------CCCGCCUUCgCa-----CCUGGGU- -5'
29116 5' -62.5 NC_006146.1 + 41838 0.66 0.600932
Target:  5'- uGUCgCGGGGGCuGucugcgccGGCGUcuGGGCCCAg -3'
miRNA:   3'- -UAGgGUCCCCGcCu-------UCGCA--CCUGGGU- -5'
29116 5' -62.5 NC_006146.1 + 168366 0.67 0.591154
Target:  5'- gGUCCC-GGGGCGGggG-GUcGGGCg-- -3'
miRNA:   3'- -UAGGGuCCCCGCCuuCgCA-CCUGggu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.