miRNA display CGI


Results 1 - 20 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29118 3' -55 NC_006146.1 + 23474 0.65 0.951736
Target:  5'- -cCuGGCCGuGGCCAgGUACgggcuGGUGGGCu -3'
miRNA:   3'- gaGuCUGGU-CUGGUaCGUG-----UCACCCG- -5'
29118 3' -55 NC_006146.1 + 157353 0.65 0.951736
Target:  5'- uCUCuGGCCGGGCgG-GCGgGGacgGGGCu -3'
miRNA:   3'- -GAGuCUGGUCUGgUaCGUgUCa--CCCG- -5'
29118 3' -55 NC_006146.1 + 154275 0.65 0.951736
Target:  5'- uCUCuGGCCGGGCgG-GCGgGGacgGGGCu -3'
miRNA:   3'- -GAGuCUGGUCUGgUaCGUgUCa--CCCG- -5'
29118 3' -55 NC_006146.1 + 151197 0.65 0.951736
Target:  5'- uCUCuGGCCGGGCgG-GCGgGGacgGGGCu -3'
miRNA:   3'- -GAGuCUGGUCUGgUaCGUgUCa--CCCG- -5'
29118 3' -55 NC_006146.1 + 148119 0.65 0.951736
Target:  5'- uCUCuGGCCGGGCgG-GCGgGGacgGGGCu -3'
miRNA:   3'- -GAGuCUGGUCUGgUaCGUgUCa--CCCG- -5'
29118 3' -55 NC_006146.1 + 145041 0.65 0.951736
Target:  5'- uCUCuGGCCGGGCgG-GCGgGGacgGGGCu -3'
miRNA:   3'- -GAGuCUGGUCUGgUaCGUgUCa--CCCG- -5'
29118 3' -55 NC_006146.1 + 141963 0.65 0.951736
Target:  5'- uCUCuGGCCGGGCgG-GCGgGGacgGGGCu -3'
miRNA:   3'- -GAGuCUGGUCUGgUaCGUgUCa--CCCG- -5'
29118 3' -55 NC_006146.1 + 62448 0.65 0.951736
Target:  5'- -cCGGGCUaguGGACCuugGUACGGacGGGCa -3'
miRNA:   3'- gaGUCUGG---UCUGGua-CGUGUCa-CCCG- -5'
29118 3' -55 NC_006146.1 + 168236 0.65 0.951736
Target:  5'- --gGGGCCGGcGCC-UGCAgGGgGGGCc -3'
miRNA:   3'- gagUCUGGUC-UGGuACGUgUCaCCCG- -5'
29118 3' -55 NC_006146.1 + 169168 0.65 0.951736
Target:  5'- --gGGGCCGGcGCC-UGCAgGGgGGGCc -3'
miRNA:   3'- gagUCUGGUC-UGGuACGUgUCaCCCG- -5'
29118 3' -55 NC_006146.1 + 167304 0.65 0.951736
Target:  5'- --gGGGCCGGcGCC-UGCAgGGgGGGCc -3'
miRNA:   3'- gagUCUGGUC-UGGuACGUgUCaCCCG- -5'
29118 3' -55 NC_006146.1 + 104419 0.65 0.951736
Target:  5'- gUCAGcACCAGccuccCCAUGCcccacAUGGUGGGg -3'
miRNA:   3'- gAGUC-UGGUCu----GGUACG-----UGUCACCCg -5'
29118 3' -55 NC_006146.1 + 124312 0.65 0.951736
Target:  5'- --aGGGCCAGGCCAauggUGCugGGUGu-- -3'
miRNA:   3'- gagUCUGGUCUGGU----ACGugUCACccg -5'
29118 3' -55 NC_006146.1 + 15912 0.66 0.947534
Target:  5'- cCUCcggcGGCCGGACCcgaggagGCGCc-UGGGCg -3'
miRNA:   3'- -GAGu---CUGGUCUGGua-----CGUGucACCCG- -5'
29118 3' -55 NC_006146.1 + 75912 0.66 0.947534
Target:  5'- cCUCAGcuGCCcc-CCAUGCcuggcCAGUGGGUc -3'
miRNA:   3'- -GAGUC--UGGucuGGUACGu----GUCACCCG- -5'
29118 3' -55 NC_006146.1 + 28223 0.66 0.947534
Target:  5'- cCUCcggcGGCCGGACCcgaggagGCGCc-UGGGCg -3'
miRNA:   3'- -GAGu---CUGGUCUGGua-----CGUGucACCCG- -5'
29118 3' -55 NC_006146.1 + 101518 0.66 0.947534
Target:  5'- gUCGGAUCuucaaaACCAUGCGCca-GGGCa -3'
miRNA:   3'- gAGUCUGGuc----UGGUACGUGucaCCCG- -5'
29118 3' -55 NC_006146.1 + 22067 0.66 0.947534
Target:  5'- cCUCcggcGGCCGGACCcgaggagGCGCc-UGGGCg -3'
miRNA:   3'- -GAGu---CUGGUCUGGua-----CGUGucACCCG- -5'
29118 3' -55 NC_006146.1 + 18989 0.66 0.947534
Target:  5'- cCUCcggcGGCCGGACCcgaggagGCGCc-UGGGCg -3'
miRNA:   3'- -GAGu---CUGGUCUGGua-----CGUGucACCCG- -5'
29118 3' -55 NC_006146.1 + 25145 0.66 0.947534
Target:  5'- cCUCcggcGGCCGGACCcgaggagGCGCc-UGGGCg -3'
miRNA:   3'- -GAGu---CUGGUCUGGua-----CGUGucACCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.