miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29119 3' -54.9 NC_006146.1 + 128875 0.66 0.959136
Target:  5'- cGGCGUga-GCCCGGGcccaGAGGgAGu -3'
miRNA:   3'- -CCGCGaugUGGGCCCuaagCUUCgUC- -5'
29119 3' -54.9 NC_006146.1 + 48704 0.66 0.959136
Target:  5'- cGGgGaCUACGUCUGGGAgugagGAGGCAGa -3'
miRNA:   3'- -CCgC-GAUGUGGGCCCUaag--CUUCGUC- -5'
29119 3' -54.9 NC_006146.1 + 157600 0.66 0.959136
Target:  5'- uGGUGCccaGCACgUGGGGguagUCGcGGGCGGg -3'
miRNA:   3'- -CCGCGa--UGUGgGCCCUa---AGC-UUCGUC- -5'
29119 3' -54.9 NC_006146.1 + 61826 0.66 0.956925
Target:  5'- gGGCGCUggugggggcagugggGCuggugCCGGGAcuccCGggGCAGa -3'
miRNA:   3'- -CCGCGA---------------UGug---GGCCCUaa--GCuuCGUC- -5'
29119 3' -54.9 NC_006146.1 + 135955 0.66 0.955407
Target:  5'- gGGUGCcACGucacCCCGGGGUgcuGggGUGGg -3'
miRNA:   3'- -CCGCGaUGU----GGGCCCUAag-CuuCGUC- -5'
29119 3' -54.9 NC_006146.1 + 32125 0.66 0.955407
Target:  5'- gGGUGCcACGucacCCCGGGGUgcuGggGUGGg -3'
miRNA:   3'- -CCGCGaUGU----GGGCCCUAag-CuuCGUC- -5'
29119 3' -54.9 NC_006146.1 + 96952 0.66 0.955407
Target:  5'- cGCGagucuggGCGCCaGGGugUCGggGCAGa -3'
miRNA:   3'- cCGCga-----UGUGGgCCCuaAGCuuCGUC- -5'
29119 3' -54.9 NC_006146.1 + 27353 0.66 0.951454
Target:  5'- uGGCGCgGCAaggCCGGGGggCGucuggacAGCAGc -3'
miRNA:   3'- -CCGCGaUGUg--GGCCCUaaGCu------UCGUC- -5'
29119 3' -54.9 NC_006146.1 + 7647 0.66 0.951454
Target:  5'- uGGUcuucuuuCUGaACCCGGGGUUCcuGGAGCAGc -3'
miRNA:   3'- -CCGc------GAUgUGGGCCCUAAG--CUUCGUC- -5'
29119 3' -54.9 NC_006146.1 + 56746 0.66 0.947272
Target:  5'- cGCGCgggACGUCCGGGGccugaucgCGGAGCAc -3'
miRNA:   3'- cCGCGa--UGUGGGCCCUaa------GCUUCGUc -5'
29119 3' -54.9 NC_006146.1 + 2963 0.66 0.947272
Target:  5'- aGGCGCUggACACCgCGaGGUaCGAguacGGCAGu -3'
miRNA:   3'- -CCGCGA--UGUGG-GCcCUAaGCU----UCGUC- -5'
29119 3' -54.9 NC_006146.1 + 53741 0.66 0.947272
Target:  5'- cGCgGCUGCGCCgGGG---CGAAGaCGGg -3'
miRNA:   3'- cCG-CGAUGUGGgCCCuaaGCUUC-GUC- -5'
29119 3' -54.9 NC_006146.1 + 28517 0.66 0.947272
Target:  5'- aGCGCaacUGCuaaACCCGGaGAaUCGuAGCAGa -3'
miRNA:   3'- cCGCG---AUG---UGGGCC-CUaAGCuUCGUC- -5'
29119 3' -54.9 NC_006146.1 + 32037 0.66 0.947272
Target:  5'- aGGCGCUgGCccaggucaugACCCGGGcgUgGcGAGCAu -3'
miRNA:   3'- -CCGCGA-UG----------UGGGCCCuaAgC-UUCGUc -5'
29119 3' -54.9 NC_006146.1 + 169725 0.66 0.946841
Target:  5'- gGGCGCUcagaucgGCGCggGGGAgcccCGggGCGGc -3'
miRNA:   3'- -CCGCGA-------UGUGggCCCUaa--GCuuCGUC- -5'
29119 3' -54.9 NC_006146.1 + 168793 0.66 0.946841
Target:  5'- gGGCGCUcagaucgGCGCggGGGAgcccCGggGCGGc -3'
miRNA:   3'- -CCGCGA-------UGUGggCCCUaa--GCuuCGUC- -5'
29119 3' -54.9 NC_006146.1 + 167861 0.66 0.946841
Target:  5'- gGGCGCUcagaucgGCGCggGGGAgcccCGggGCGGc -3'
miRNA:   3'- -CCGCGA-------UGUGggCCCUaa--GCuuCGUC- -5'
29119 3' -54.9 NC_006146.1 + 39861 0.66 0.942859
Target:  5'- gGGgGCUGugUGCCCGGGGgagGAGGCuGa -3'
miRNA:   3'- -CCgCGAU--GUGGGCCCUaagCUUCGuC- -5'
29119 3' -54.9 NC_006146.1 + 41521 0.66 0.942859
Target:  5'- cGGCug-ACGCCCGGGAUcCGcGGGCu- -3'
miRNA:   3'- -CCGcgaUGUGGGCCCUAaGC-UUCGuc -5'
29119 3' -54.9 NC_006146.1 + 18454 0.66 0.942859
Target:  5'- cGGUGCagaUGCucuACCCGGGGaUCGAcgAGCu- -3'
miRNA:   3'- -CCGCG---AUG---UGGGCCCUaAGCU--UCGuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.