miRNA display CGI


Results 1 - 20 of 174 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29124 3' -56.3 NC_006146.1 + 155086 0.66 0.929772
Target:  5'- cUCgggCCUCugGgcuggucucgcUUGCUgGCCCCAAUgGCCg -3'
miRNA:   3'- -AGa--GGGGugC-----------AAUGA-CGGGGUUG-CGG- -5'
29124 3' -56.3 NC_006146.1 + 152008 0.66 0.929772
Target:  5'- cUCgggCCUCugGgcuggucucgcUUGCUgGCCCCAAUgGCCg -3'
miRNA:   3'- -AGa--GGGGugC-----------AAUGA-CGGGGUUG-CGG- -5'
29124 3' -56.3 NC_006146.1 + 148930 0.66 0.929772
Target:  5'- cUCgggCCUCugGgcuggucucgcUUGCUgGCCCCAAUgGCCg -3'
miRNA:   3'- -AGa--GGGGugC-----------AAUGA-CGGGGUUG-CGG- -5'
29124 3' -56.3 NC_006146.1 + 145852 0.66 0.929772
Target:  5'- cUCgggCCUCugGgcuggucucgcUUGCUgGCCCCAAUgGCCg -3'
miRNA:   3'- -AGa--GGGGugC-----------AAUGA-CGGGGUUG-CGG- -5'
29124 3' -56.3 NC_006146.1 + 142774 0.66 0.929772
Target:  5'- cUCgggCCUCugGgcuggucucgcUUGCUgGCCCCAAUgGCCg -3'
miRNA:   3'- -AGa--GGGGugC-----------AAUGA-CGGGGUUG-CGG- -5'
29124 3' -56.3 NC_006146.1 + 106474 0.66 0.929772
Target:  5'- gUCUCCUgGCagcgUAC-GCCgCCGugGCCc -3'
miRNA:   3'- -AGAGGGgUGca--AUGaCGG-GGUugCGG- -5'
29124 3' -56.3 NC_006146.1 + 105401 0.66 0.929772
Target:  5'- --aCCCCACaccaACcaGCCCC-ACGCCg -3'
miRNA:   3'- agaGGGGUGcaa-UGa-CGGGGuUGCGG- -5'
29124 3' -56.3 NC_006146.1 + 65919 0.66 0.929772
Target:  5'- gUCUCCCCAgagcccccuCGggA--GCCCCAG-GCCu -3'
miRNA:   3'- -AGAGGGGU---------GCaaUgaCGGGGUUgCGG- -5'
29124 3' -56.3 NC_006146.1 + 158165 0.66 0.929772
Target:  5'- cUCgggCCUCugGgcuggucucgcUUGCUgGCCCCAAUgGCCg -3'
miRNA:   3'- -AGa--GGGGugC-----------AAUGA-CGGGGUUG-CGG- -5'
29124 3' -56.3 NC_006146.1 + 46668 0.66 0.929772
Target:  5'- gUUCCCCgGCGUUG--GCCUCcACGUCg -3'
miRNA:   3'- aGAGGGG-UGCAAUgaCGGGGuUGCGG- -5'
29124 3' -56.3 NC_006146.1 + 130836 0.66 0.929772
Target:  5'- cCUCCgCCGgGagacGCUGUCCUAcggacACGCCg -3'
miRNA:   3'- aGAGG-GGUgCaa--UGACGGGGU-----UGCGG- -5'
29124 3' -56.3 NC_006146.1 + 129391 0.66 0.928745
Target:  5'- cCUCCUCugGggccggaagcCUGCCCCAGa-CCa -3'
miRNA:   3'- aGAGGGGugCaau-------GACGGGGUUgcGG- -5'
29124 3' -56.3 NC_006146.1 + 7268 0.66 0.927708
Target:  5'- -aUUCCCAacaaaaaucCUGCCCC-ACGCCu -3'
miRNA:   3'- agAGGGGUgcaau----GACGGGGuUGCGG- -5'
29124 3' -56.3 NC_006146.1 + 3491 0.66 0.924542
Target:  5'- --aCCCCGCGcug--GCCCC--CGCCa -3'
miRNA:   3'- agaGGGGUGCaaugaCGGGGuuGCGG- -5'
29124 3' -56.3 NC_006146.1 + 2559 0.66 0.924542
Target:  5'- --aCCCCGCGcug--GCCCC--CGCCa -3'
miRNA:   3'- agaGGGGUGCaaugaCGGGGuuGCGG- -5'
29124 3' -56.3 NC_006146.1 + 1627 0.66 0.924542
Target:  5'- --aCCCCGCGcug--GCCCC--CGCCa -3'
miRNA:   3'- agaGGGGUGCaaugaCGGGGuuGCGG- -5'
29124 3' -56.3 NC_006146.1 + 696 0.66 0.924542
Target:  5'- --aCCCCGCGcug--GCCCC--CGCCa -3'
miRNA:   3'- agaGGGGUGCaaugaCGGGGuuGCGG- -5'
29124 3' -56.3 NC_006146.1 + 22075 0.66 0.924542
Target:  5'- aUUUCCUCA----GCUGCCUCAGacaGCCg -3'
miRNA:   3'- -AGAGGGGUgcaaUGACGGGGUUg--CGG- -5'
29124 3' -56.3 NC_006146.1 + 42649 0.66 0.924542
Target:  5'- ----gCCGCGUgUACUGCUCCAACuGCg -3'
miRNA:   3'- agaggGGUGCA-AUGACGGGGUUG-CGg -5'
29124 3' -56.3 NC_006146.1 + 85343 0.66 0.924542
Target:  5'- --aCCCCACGUgcccccgACcgugugaccagaUGCCCgguggaGACGCCa -3'
miRNA:   3'- agaGGGGUGCAa------UG------------ACGGGg-----UUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.