miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29124 5' -58.9 NC_006146.1 + 28777 0.66 0.821563
Target:  5'- aCUGGgagcauaccCUGGgGCCGagggcucACUUGGGGCa -3'
miRNA:   3'- -GACCau-------GACCgCGGCgu-----UGGACCCUG- -5'
29124 5' -58.9 NC_006146.1 + 146517 0.66 0.821563
Target:  5'- -cGGagaGCgaaGGCGCCGCGcCCUGGaGCu -3'
miRNA:   3'- gaCCa--UGa--CCGCGGCGUuGGACCcUG- -5'
29124 5' -58.9 NC_006146.1 + 159601 0.66 0.821563
Target:  5'- -aGGUccgaguuguagaACUGGCGCUGC----UGGGGCa -3'
miRNA:   3'- gaCCA------------UGACCGCGGCGuuggACCCUG- -5'
29124 5' -58.9 NC_006146.1 + 123398 0.66 0.81309
Target:  5'- gCUGGaACUGGcCGCgGCGGCCgaaGACc -3'
miRNA:   3'- -GACCaUGACC-GCGgCGUUGGaccCUG- -5'
29124 5' -58.9 NC_006146.1 + 38242 0.66 0.81309
Target:  5'- aCUGGacccguCUcGGCGCCGUguguGCCUGGaACa -3'
miRNA:   3'- -GACCau----GA-CCGCGGCGu---UGGACCcUG- -5'
29124 5' -58.9 NC_006146.1 + 147760 0.66 0.80446
Target:  5'- -gGGgagGCgGGCGCCcuuGCCUGGaGGCa -3'
miRNA:   3'- gaCCa--UGaCCGCGGcguUGGACC-CUG- -5'
29124 5' -58.9 NC_006146.1 + 144683 0.66 0.80446
Target:  5'- -gGGgagGCgGGCGCCcuuGCCUGGaGGCg -3'
miRNA:   3'- gaCCa--UGaCCGCGGcguUGGACC-CUG- -5'
29124 5' -58.9 NC_006146.1 + 141605 0.66 0.80446
Target:  5'- -gGGgagGCgGGCGCCcuuGCCUGGaGGCa -3'
miRNA:   3'- gaCCa--UGaCCGCGGcguUGGACC-CUG- -5'
29124 5' -58.9 NC_006146.1 + 15426 0.66 0.80446
Target:  5'- -aGGgGCUGGCccgGCUGCAguccuGCCUGGcGCa -3'
miRNA:   3'- gaCCaUGACCG---CGGCGU-----UGGACCcUG- -5'
29124 5' -58.9 NC_006146.1 + 13165 0.66 0.80446
Target:  5'- ----gACgUGGUGCCggGCAACCUGGuGACc -3'
miRNA:   3'- gaccaUG-ACCGCGG--CGUUGGACC-CUG- -5'
29124 5' -58.9 NC_006146.1 + 98447 0.66 0.80446
Target:  5'- -cGGUuucGGCGCCGC--CCgGGGGCc -3'
miRNA:   3'- gaCCAugaCCGCGGCGuuGGaCCCUG- -5'
29124 5' -58.9 NC_006146.1 + 44060 0.66 0.80446
Target:  5'- --uGUAUguuggGGCGCCuGCAugCcGGGACu -3'
miRNA:   3'- gacCAUGa----CCGCGG-CGUugGaCCCUG- -5'
29124 5' -58.9 NC_006146.1 + 36177 0.66 0.80446
Target:  5'- gCUGGc-CUGGUGCaUGCAuGCCUGcaGGACg -3'
miRNA:   3'- -GACCauGACCGCG-GCGU-UGGAC--CCUG- -5'
29124 5' -58.9 NC_006146.1 + 150838 0.66 0.80446
Target:  5'- -gGGgagGCgGGCGCCcuuGCCUGGaGGCa -3'
miRNA:   3'- gaCCa--UGaCCGCGGcguUGGACC-CUG- -5'
29124 5' -58.9 NC_006146.1 + 153916 0.66 0.80446
Target:  5'- -gGGgagGCgGGCGCCcuuGCCUGGaGGCa -3'
miRNA:   3'- gaCCa--UGaCCGCGGcguUGGACC-CUG- -5'
29124 5' -58.9 NC_006146.1 + 156994 0.66 0.80446
Target:  5'- -gGGgagGCgGGCGCCcuuGCCUGGaGGCa -3'
miRNA:   3'- gaCCa--UGaCCGCGGcguUGGACC-CUG- -5'
29124 5' -58.9 NC_006146.1 + 40111 0.66 0.795679
Target:  5'- -cGGaGCcGGCGCCuGUu-UCUGGGACa -3'
miRNA:   3'- gaCCaUGaCCGCGG-CGuuGGACCCUG- -5'
29124 5' -58.9 NC_006146.1 + 57387 0.66 0.795679
Target:  5'- -cGGUggGCUGGCcCCGCGACCgugcccGGccGACg -3'
miRNA:   3'- gaCCA--UGACCGcGGCGUUGGa-----CC--CUG- -5'
29124 5' -58.9 NC_006146.1 + 72361 0.66 0.786756
Target:  5'- cCUGGaccgGCUGGCGgCGacgaAACCcgagucgggUGGGGCc -3'
miRNA:   3'- -GACCa---UGACCGCgGCg---UUGG---------ACCCUG- -5'
29124 5' -58.9 NC_006146.1 + 14842 0.66 0.786756
Target:  5'- -cGGgcCcGGgGCCGCGggagGCCgagGGGGCa -3'
miRNA:   3'- gaCCauGaCCgCGGCGU----UGGa--CCCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.