miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29125 5' -56.2 NC_006146.1 + 93546 0.66 0.907385
Target:  5'- uGUUCCAGGCAgcacacgaAGCCgGCcuCGUCcuUCACc -3'
miRNA:   3'- -CAGGGUCCGU--------UCGGgUGu-GUAG--AGUG- -5'
29125 5' -56.2 NC_006146.1 + 112853 0.66 0.907385
Target:  5'- aGUCCCAGuuGAGCugCCGCcacuuagaACAUCUCGg -3'
miRNA:   3'- -CAGGGUCcgUUCG--GGUG--------UGUAGAGUg -5'
29125 5' -56.2 NC_006146.1 + 127267 0.66 0.901094
Target:  5'- -cCCCAGGCGGccacGCCC-CGCcgCcCACu -3'
miRNA:   3'- caGGGUCCGUU----CGGGuGUGuaGaGUG- -5'
29125 5' -56.2 NC_006146.1 + 160379 0.66 0.901094
Target:  5'- -gCCCuuGGCAGG-CCGCccaGUCUCGCa -3'
miRNA:   3'- caGGGu-CCGUUCgGGUGug-UAGAGUG- -5'
29125 5' -56.2 NC_006146.1 + 75847 0.66 0.901094
Target:  5'- -cCCCAcGaGUggGAGCCCcCAUGUCUCGCu -3'
miRNA:   3'- caGGGU-C-CG--UUCGGGuGUGUAGAGUG- -5'
29125 5' -56.2 NC_006146.1 + 68171 0.66 0.894567
Target:  5'- -cCCCGGGCAGGCgCA-GCGUCaggaCGCg -3'
miRNA:   3'- caGGGUCCGUUCGgGUgUGUAGa---GUG- -5'
29125 5' -56.2 NC_006146.1 + 13282 0.66 0.894567
Target:  5'- -aCCCAGGCGGuGCCCGCccGCGaCUaccccCACg -3'
miRNA:   3'- caGGGUCCGUU-CGGGUG--UGUaGA-----GUG- -5'
29125 5' -56.2 NC_006146.1 + 161263 0.66 0.894567
Target:  5'- cGUCCCAacgcGGCA--UCCACGCGUgcCUUACa -3'
miRNA:   3'- -CAGGGU----CCGUucGGGUGUGUA--GAGUG- -5'
29125 5' -56.2 NC_006146.1 + 105484 0.66 0.887808
Target:  5'- uUCCC-GGUAAuuGCCCACGgCGUC-CACc -3'
miRNA:   3'- cAGGGuCCGUU--CGGGUGU-GUAGaGUG- -5'
29125 5' -56.2 NC_006146.1 + 111409 0.66 0.887808
Target:  5'- -gCUCagagAGGCGGGCCCACAUAUCc--- -3'
miRNA:   3'- caGGG----UCCGUUCGGGUGUGUAGagug -5'
29125 5' -56.2 NC_006146.1 + 81711 0.66 0.887808
Target:  5'- aGUCCCcaguGGCGGGCCCAa--GUUcCGCu -3'
miRNA:   3'- -CAGGGu---CCGUUCGGGUgugUAGaGUG- -5'
29125 5' -56.2 NC_006146.1 + 78642 0.66 0.880819
Target:  5'- -cCCCAGGcCGGGCCCGCcccccaGCAgcagC-CACa -3'
miRNA:   3'- caGGGUCC-GUUCGGGUG------UGUa---GaGUG- -5'
29125 5' -56.2 NC_006146.1 + 130401 0.66 0.880819
Target:  5'- cUCCgAGGCAgAGUCCGCuGCcUUUCGCg -3'
miRNA:   3'- cAGGgUCCGU-UCGGGUG-UGuAGAGUG- -5'
29125 5' -56.2 NC_006146.1 + 78463 0.67 0.866176
Target:  5'- -cCCCAGGCGGGCCaccuUugAUGUCUUggGCu -3'
miRNA:   3'- caGGGUCCGUUCGG----GugUGUAGAG--UG- -5'
29125 5' -56.2 NC_006146.1 + 58609 0.67 0.865421
Target:  5'- gGUCCCcgagaaccacgaaAGGU--GCCCGgGCAUCUuCACg -3'
miRNA:   3'- -CAGGG-------------UCCGuuCGGGUgUGUAGA-GUG- -5'
29125 5' -56.2 NC_006146.1 + 4254 0.67 0.858531
Target:  5'- uUCCC-GGCucGCUCugGCGUC-CGCg -3'
miRNA:   3'- cAGGGuCCGuuCGGGugUGUAGaGUG- -5'
29125 5' -56.2 NC_006146.1 + 55254 0.67 0.84344
Target:  5'- -gCCCGGGC-GGCCCGgGCGaagcggcucguggggCUCGCg -3'
miRNA:   3'- caGGGUCCGuUCGGGUgUGUa--------------GAGUG- -5'
29125 5' -56.2 NC_006146.1 + 58503 0.67 0.842625
Target:  5'- aUCCaCAGGCAcggcAGCCCcuGCGgCGUC-CACa -3'
miRNA:   3'- cAGG-GUCCGU----UCGGG--UGU-GUAGaGUG- -5'
29125 5' -56.2 NC_006146.1 + 22757 0.67 0.841809
Target:  5'- -aCCCGGGCccugaccagcacgAAGCCCAUGCGg--CACu -3'
miRNA:   3'- caGGGUCCG-------------UUCGGGUGUGUagaGUG- -5'
29125 5' -56.2 NC_006146.1 + 61405 0.67 0.834379
Target:  5'- uGUCCCAGGCuggcugcgguGGCCaACGCGgg-CACg -3'
miRNA:   3'- -CAGGGUCCGu---------UCGGgUGUGUagaGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.