miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29126 5' -55.6 NC_006146.1 + 125223 0.66 0.939861
Target:  5'- cUCAGAGccCuuCCgCUCCCuGGCGGa -3'
miRNA:   3'- cAGUCUUuuGuuGG-GAGGGcCCGCCa -5'
29126 5' -55.6 NC_006146.1 + 20575 0.66 0.939861
Target:  5'- -aCAGAcuAGcCGGCCUgcgCCCGGGCGa- -3'
miRNA:   3'- caGUCU--UUuGUUGGGa--GGGCCCGCca -5'
29126 5' -55.6 NC_006146.1 + 58790 0.66 0.939861
Target:  5'- -aCGGAGGGCAAgUUUUgUGGGCGGg -3'
miRNA:   3'- caGUCUUUUGUUgGGAGgGCCCGCCa -5'
29126 5' -55.6 NC_006146.1 + 43693 0.66 0.939861
Target:  5'- aGUCAGGAcGCGGCgagCCUGGGCGa- -3'
miRNA:   3'- -CAGUCUUuUGUUGggaGGGCCCGCca -5'
29126 5' -55.6 NC_006146.1 + 94097 0.66 0.93939
Target:  5'- -cCAGAGAGCAGCggCCUCCUgauagccguguggGGGCGu- -3'
miRNA:   3'- caGUCUUUUGUUG--GGAGGG-------------CCCGCca -5'
29126 5' -55.6 NC_006146.1 + 16522 0.66 0.935047
Target:  5'- -cCAGccGGAGgGACCCcggcagCCCGGGUGGc -3'
miRNA:   3'- caGUC--UUUUgUUGGGa-----GGGCCCGCCa -5'
29126 5' -55.6 NC_006146.1 + 19600 0.66 0.935047
Target:  5'- -cCAGccGGAGgGACCCcggcagCCCGGGUGGc -3'
miRNA:   3'- caGUC--UUUUgUUGGGa-----GGGCCCGCCa -5'
29126 5' -55.6 NC_006146.1 + 13444 0.66 0.935047
Target:  5'- -cCAGccGGAGgGACCCcggcagCCCGGGUGGc -3'
miRNA:   3'- caGUC--UUUUgUUGGGa-----GGGCCCGCCa -5'
29126 5' -55.6 NC_006146.1 + 28834 0.66 0.935047
Target:  5'- -cCAGccGGAGgGACCCcggcagCCCGGGUGGc -3'
miRNA:   3'- caGUC--UUUUgUUGGGa-----GGGCCCGCCa -5'
29126 5' -55.6 NC_006146.1 + 22678 0.66 0.935047
Target:  5'- -cCAGccGGAGgGACCCcggcagCCCGGGUGGc -3'
miRNA:   3'- caGUC--UUUUgUUGGGa-----GGGCCCGCCa -5'
29126 5' -55.6 NC_006146.1 + 25756 0.66 0.935047
Target:  5'- -cCAGccGGAGgGACCCcggcagCCCGGGUGGc -3'
miRNA:   3'- caGUC--UUUUgUUGGGa-----GGGCCCGCCa -5'
29126 5' -55.6 NC_006146.1 + 169560 0.66 0.935047
Target:  5'- -aCAGggGuuguuACUCUCCCauGGGUGGUa -3'
miRNA:   3'- caGUCuuUugu--UGGGAGGG--CCCGCCA- -5'
29126 5' -55.6 NC_006146.1 + 100127 0.66 0.929997
Target:  5'- uUCAGAAuguCuuCCaUCuCCGGGCGGg -3'
miRNA:   3'- cAGUCUUuu-GuuGGgAG-GGCCCGCCa -5'
29126 5' -55.6 NC_006146.1 + 6687 0.66 0.928435
Target:  5'- aGUguGAcuuAAAUcACCCgucccggguacaagUCCCGGGUGGUg -3'
miRNA:   3'- -CAguCU---UUUGuUGGG--------------AGGGCCCGCCA- -5'
29126 5' -55.6 NC_006146.1 + 72448 0.66 0.924708
Target:  5'- -cCAGAGAcUGGCC--CCCGGGCGGc -3'
miRNA:   3'- caGUCUUUuGUUGGgaGGGCCCGCCa -5'
29126 5' -55.6 NC_006146.1 + 118035 0.66 0.924708
Target:  5'- ---cGAGGACcacgGACCUggagccCCCGGGCGGg -3'
miRNA:   3'- caguCUUUUG----UUGGGa-----GGGCCCGCCa -5'
29126 5' -55.6 NC_006146.1 + 117773 0.66 0.919181
Target:  5'- --gAGGAGGCAACCgUcgcgcuccCCCGGGcCGGg -3'
miRNA:   3'- cagUCUUUUGUUGGgA--------GGGCCC-GCCa -5'
29126 5' -55.6 NC_006146.1 + 139026 0.66 0.913417
Target:  5'- cUUAGGAAAC-ACCgcaUCCCagGGGCGGa -3'
miRNA:   3'- cAGUCUUUUGuUGGg--AGGG--CCCGCCa -5'
29126 5' -55.6 NC_006146.1 + 55242 0.66 0.913417
Target:  5'- cUCAGGu-ACGucGCCCgggcggCCCGGGCGa- -3'
miRNA:   3'- cAGUCUuuUGU--UGGGa-----GGGCCCGCca -5'
29126 5' -55.6 NC_006146.1 + 15117 0.66 0.913417
Target:  5'- -cCAGGgccaccGAGCGGCUCUUCUGcGGCGGg -3'
miRNA:   3'- caGUCU------UUUGUUGGGAGGGC-CCGCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.