miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29129 3' -59 NC_006146.1 + 51750 0.66 0.799255
Target:  5'- ---gAGGuGGGCUucuuguGcGGGCUGUCCUUa -3'
miRNA:   3'- cacaUCCuCCCGGu-----C-CUCGACAGGAG- -5'
29129 3' -59 NC_006146.1 + 52332 0.66 0.799255
Target:  5'- -cGUGGGccgGGGuGCCcGGGGCggcGUCCUUu -3'
miRNA:   3'- caCAUCC---UCC-CGGuCCUCGa--CAGGAG- -5'
29129 3' -59 NC_006146.1 + 122608 0.66 0.786724
Target:  5'- -gGU-GGAGGGCgAGGGGCggaggaggccgggGcCCUCu -3'
miRNA:   3'- caCAuCCUCCCGgUCCUCGa------------CaGGAG- -5'
29129 3' -59 NC_006146.1 + 76395 0.66 0.762765
Target:  5'- ---gGGGAGGGaCCGGGGGCg--CCg- -3'
miRNA:   3'- cacaUCCUCCC-GGUCCUCGacaGGag -5'
29129 3' -59 NC_006146.1 + 42882 0.66 0.762765
Target:  5'- -gGUGGGAGGcGaagGGGGGCacGUCCUCc -3'
miRNA:   3'- caCAUCCUCC-Cgg-UCCUCGa-CAGGAG- -5'
29129 3' -59 NC_006146.1 + 139321 0.67 0.72447
Target:  5'- uGUGgauugAGGAGGGUCGGGA--UGUUCUg -3'
miRNA:   3'- -CACa----UCCUCCCGGUCCUcgACAGGAg -5'
29129 3' -59 NC_006146.1 + 167654 0.67 0.714681
Target:  5'- cGUGccGGGGGcCCGGGGGCgUGUCC-Cg -3'
miRNA:   3'- -CACauCCUCCcGGUCCUCG-ACAGGaG- -5'
29129 3' -59 NC_006146.1 + 67003 0.67 0.714681
Target:  5'- gGUGUAGGAGauGGCCcgGGuGAGCcgcgUGUCCg- -3'
miRNA:   3'- -CACAUCCUC--CCGG--UC-CUCG----ACAGGag -5'
29129 3' -59 NC_006146.1 + 49675 0.67 0.714681
Target:  5'- ---cAGGGGGGCUAuGGcGGCgucGUCCUCc -3'
miRNA:   3'- cacaUCCUCCCGGU-CC-UCGa--CAGGAG- -5'
29129 3' -59 NC_006146.1 + 5203 0.67 0.714681
Target:  5'- cUGggccuGGGGGaGCUAGGGGUgcagGUCCUUg -3'
miRNA:   3'- cACau---CCUCC-CGGUCCUCGa---CAGGAG- -5'
29129 3' -59 NC_006146.1 + 123600 0.67 0.704823
Target:  5'- ---cAGGAGGcCCGGGAGgaGUCC-Cg -3'
miRNA:   3'- cacaUCCUCCcGGUCCUCgaCAGGaG- -5'
29129 3' -59 NC_006146.1 + 170114 0.67 0.704823
Target:  5'- ---aGGGGGGGCCGgcGGGGC-GUCCcgUCg -3'
miRNA:   3'- cacaUCCUCCCGGU--CCUCGaCAGG--AG- -5'
29129 3' -59 NC_006146.1 + 169183 0.67 0.704823
Target:  5'- ---aGGGGGGGCCGgcGGGGC-GUCCcgUCg -3'
miRNA:   3'- cacaUCCUCCCGGU--CCUCGaCAGG--AG- -5'
29129 3' -59 NC_006146.1 + 168251 0.67 0.704823
Target:  5'- ---aGGGGGGGCCGgcGGGGC-GUCCcgUCg -3'
miRNA:   3'- cacaUCCUCCCGGU--CCUCGaCAGG--AG- -5'
29129 3' -59 NC_006146.1 + 167319 0.67 0.704823
Target:  5'- ---aGGGGGGGCCGgcGGGGC-GUCCcgUCg -3'
miRNA:   3'- cacaUCCUCCCGGU--CCUCGaCAGG--AG- -5'
29129 3' -59 NC_006146.1 + 41035 0.67 0.694905
Target:  5'- cGUGggAGGAGGGCCuAGGAcaGCU-UCCg- -3'
miRNA:   3'- -CACa-UCCUCCCGG-UCCU--CGAcAGGag -5'
29129 3' -59 NC_006146.1 + 124523 0.68 0.683937
Target:  5'- cUGgcgAGGgacgGGGGCCuggGGGAGCUgcugucggacgcgGUCCUCa -3'
miRNA:   3'- cACa--UCC----UCCCGG---UCCUCGA-------------CAGGAG- -5'
29129 3' -59 NC_006146.1 + 153533 0.68 0.674925
Target:  5'- -aGUGGG-GGGCguGGGGCUG-CUUg -3'
miRNA:   3'- caCAUCCuCCCGguCCUCGACaGGAg -5'
29129 3' -59 NC_006146.1 + 37672 0.68 0.674925
Target:  5'- -gGUAGGGGGGCUGGGGGCa------ -3'
miRNA:   3'- caCAUCCUCCCGGUCCUCGacaggag -5'
29129 3' -59 NC_006146.1 + 143579 0.68 0.674925
Target:  5'- cUGUuuuuGGAGGGCCAGuugaagcaGGCaUGUCUUCa -3'
miRNA:   3'- cACAu---CCUCCCGGUCc-------UCG-ACAGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.