miRNA display CGI


Results 41 - 60 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29131 3' -55.7 NC_006146.1 + 169972 0.66 0.914377
Target:  5'- cGGGACGGgAGGCcggCgCGCGcCCGGGg -3'
miRNA:   3'- cUCCUGCCgUUUGa--G-GUGCaGGUCCg -5'
29131 3' -55.7 NC_006146.1 + 169040 0.66 0.914377
Target:  5'- cGGGACGGgAGGCcggCgCGCGcCCGGGg -3'
miRNA:   3'- cUCCUGCCgUUUGa--G-GUGCaGGUCCg -5'
29131 3' -55.7 NC_006146.1 + 98301 0.66 0.913794
Target:  5'- uGGGGCugagGGCGuGCUCCguggccgucuggcACGgggCCGGGCg -3'
miRNA:   3'- cUCCUG----CCGUuUGAGG-------------UGCa--GGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 24709 0.67 0.908445
Target:  5'- gGAGGAgcccauGCAGcACUa-GCGUCCAGGCg -3'
miRNA:   3'- -CUCCUgc----CGUU-UGAggUGCAGGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 50067 0.67 0.908445
Target:  5'- cAGGAa-GCGGACgUCCucuuCGUCCAcGGCg -3'
miRNA:   3'- cUCCUgcCGUUUG-AGGu---GCAGGU-CCG- -5'
29131 3' -55.7 NC_006146.1 + 116058 0.67 0.908445
Target:  5'- uGGGGAUGGCGcauGACaaauguggCgACGUCCuGGUg -3'
miRNA:   3'- -CUCCUGCCGU---UUGa-------GgUGCAGGuCCG- -5'
29131 3' -55.7 NC_006146.1 + 106129 0.67 0.908445
Target:  5'- cGAGGGuugaggGGUgaGAGCUCCAaggCCAGGCu -3'
miRNA:   3'- -CUCCUg-----CCG--UUUGAGGUgcaGGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 98241 0.67 0.907839
Target:  5'- cGGGGugcAgGGCGGACagCACGUCCaacagaaAGGCc -3'
miRNA:   3'- -CUCC---UgCCGUUUGagGUGCAGG-------UCCG- -5'
29131 3' -55.7 NC_006146.1 + 165681 0.67 0.904774
Target:  5'- cGAGGcCGGCAAggaccugcaccccuaGCUCCc---CCAGGCc -3'
miRNA:   3'- -CUCCuGCCGUU---------------UGAGGugcaGGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 33602 0.67 0.90228
Target:  5'- uGGGugGGCGuGgUCCGCGggUUCGGuGCa -3'
miRNA:   3'- cUCCugCCGUuUgAGGUGC--AGGUC-CG- -5'
29131 3' -55.7 NC_006146.1 + 59599 0.67 0.90228
Target:  5'- gGAGGGCGGCGucccccgucAGgUCCuuGaggaaaaagugcUCCAGGCc -3'
miRNA:   3'- -CUCCUGCCGU---------UUgAGGugC------------AGGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 108691 0.67 0.90228
Target:  5'- aGAGGcuGCGGCGcagggcuuuuAGCUUCugGcUCCguGGGCg -3'
miRNA:   3'- -CUCC--UGCCGU----------UUGAGGugC-AGG--UCCG- -5'
29131 3' -55.7 NC_006146.1 + 114616 0.67 0.90228
Target:  5'- cGAGG-CGGC--GCUggACGUCCuGGCc -3'
miRNA:   3'- -CUCCuGCCGuuUGAggUGCAGGuCCG- -5'
29131 3' -55.7 NC_006146.1 + 156338 0.67 0.900386
Target:  5'- uGGGGcucacgccccgaaaGCGGCccagcAGCUCCAgggcccgGUCCAGGCu -3'
miRNA:   3'- -CUCC--------------UGCCGu----UUGAGGUg------CAGGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 81822 0.67 0.898471
Target:  5'- uGAGGAgccguggcccaacacCaGCAGGCUCCAUacCCGGGCu -3'
miRNA:   3'- -CUCCU---------------GcCGUUUGAGGUGcaGGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 64250 0.67 0.895886
Target:  5'- aGAGGACGGCccuGACcagccggCCGCag-CAGGCg -3'
miRNA:   3'- -CUCCUGCCGu--UUGa------GGUGcagGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 39897 0.67 0.895886
Target:  5'- -cGGcUGGCuuuugAGAUugUCCACGUCCAGGg -3'
miRNA:   3'- cuCCuGCCG-----UUUG--AGGUGCAGGUCCg -5'
29131 3' -55.7 NC_006146.1 + 49077 0.67 0.895886
Target:  5'- aAGGAgGGCugAGGCUCCGgcUGUggcUCAGGCg -3'
miRNA:   3'- cUCCUgCCG--UUUGAGGU--GCA---GGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 84433 0.67 0.89194
Target:  5'- uGAGGAUGGagaaggaaggccuccUAAGCUCCAaGUUCAaGGCc -3'
miRNA:   3'- -CUCCUGCC---------------GUUUGAGGUgCAGGU-CCG- -5'
29131 3' -55.7 NC_006146.1 + 55169 0.67 0.889265
Target:  5'- cAGGGgGGUGA---CCGCGUCCcAGGCu -3'
miRNA:   3'- cUCCUgCCGUUugaGGUGCAGG-UCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.