miRNA display CGI


Results 41 - 60 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29131 3' -55.7 NC_006146.1 + 34234 0.69 0.811622
Target:  5'- aGGGGcaccCGGCccccggccccGAGCUCCAgGaCCGGGCa -3'
miRNA:   3'- -CUCCu---GCCG----------UUUGAGGUgCaGGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 34327 0.69 0.811622
Target:  5'- aGGGGcaccCGGCccccggccccGAGCUCCAgGaCCGGGCa -3'
miRNA:   3'- -CUCCu---GCCG----------UUUGAGGUgCaGGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 34420 0.69 0.811622
Target:  5'- aGGGGcaccCGGCccccggccccGAGCUCCAgGaCCGGGCa -3'
miRNA:   3'- -CUCCu---GCCG----------UUUGAGGUgCaGGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 34513 0.69 0.811622
Target:  5'- aGGGGcaccCGGCccccggccccGAGCUCCAgGaCCGGGCa -3'
miRNA:   3'- -CUCCu---GCCG----------UUUGAGGUgCaGGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 34606 0.69 0.811622
Target:  5'- aGGGGcaccCGGCccccggccccGAGCUCCAgGaCCGGGCa -3'
miRNA:   3'- -CUCCu---GCCG----------UUUGAGGUgCaGGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 34699 0.69 0.811622
Target:  5'- aGGGGcaccCGGCccccggccccGAGCUCCAgGaCCGGGCa -3'
miRNA:   3'- -CUCCu---GCCG----------UUUGAGGUgCaGGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 34792 0.69 0.811622
Target:  5'- aGGGGcaccCGGCccccggccccGAGCUCCAgGaCCGGGCa -3'
miRNA:   3'- -CUCCu---GCCG----------UUUGAGGUgCaGGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 34885 0.69 0.811622
Target:  5'- aGGGGcaccCGGCccccggccccGAGCUCCAgGaCCGGGCa -3'
miRNA:   3'- -CUCCu---GCCG----------UUUGAGGUgCaGGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 34977 0.69 0.811622
Target:  5'- aGGGGcaccCGGCccccggccccGAGCUCCAgGaCCGGGCa -3'
miRNA:   3'- -CUCCu---GCCG----------UUUGAGGUgCaGGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 35070 0.69 0.811622
Target:  5'- aGGGGcaccCGGCccccggccccGAGCUCCAgGaCCGGGCa -3'
miRNA:   3'- -CUCCu---GCCG----------UUUGAGGUgCaGGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 35163 0.69 0.811622
Target:  5'- aGGGGcaccCGGCccccggccccGAGCUCCAgGaCCGGGCa -3'
miRNA:   3'- -CUCCu---GCCG----------UUUGAGGUgCaGGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 35256 0.69 0.811622
Target:  5'- aGGGGcaccCGGCccccggccccGAGCUCCAgGaCCGGGCa -3'
miRNA:   3'- -CUCCu---GCCG----------UUUGAGGUgCaGGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 35349 0.69 0.811622
Target:  5'- aGGGGcaccCGGCccccggccccGAGCUCCAgGaCCGGGCa -3'
miRNA:   3'- -CUCCu---GCCG----------UUUGAGGUgCaGGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 35442 0.69 0.811622
Target:  5'- aGGGGcaccCGGCccccggccccGAGCUCCAgGaCCGGGCa -3'
miRNA:   3'- -CUCCu---GCCG----------UUUGAGGUgCaGGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 35535 0.69 0.811622
Target:  5'- aGGGGcaccCGGCccccggccccGAGCUCCAgGaCCGGGCa -3'
miRNA:   3'- -CUCCu---GCCG----------UUUGAGGUgCaGGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 35628 0.69 0.811622
Target:  5'- aGGGGcaccCGGCccccggccccGAGCUCCAgGaCCGGGCa -3'
miRNA:   3'- -CUCCu---GCCG----------UUUGAGGUgCaGGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 35721 0.69 0.811622
Target:  5'- aGGGGcaccCGGCccccggccccGAGCUCCAgGaCCGGGCa -3'
miRNA:   3'- -CUCCu---GCCG----------UUUGAGGUgCaGGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 38962 0.72 0.627479
Target:  5'- aGAGGugGGCAAGggaUCCAC-UCCcGGUg -3'
miRNA:   3'- -CUCCugCCGUUUg--AGGUGcAGGuCCG- -5'
29131 3' -55.7 NC_006146.1 + 39677 0.74 0.514522
Target:  5'- gGAGG-CGGCGGGCUCCugGgccugcagcgccgcUCCggAGGCa -3'
miRNA:   3'- -CUCCuGCCGUUUGAGGugC--------------AGG--UCCG- -5'
29131 3' -55.7 NC_006146.1 + 39897 0.67 0.895886
Target:  5'- -cGGcUGGCuuuugAGAUugUCCACGUCCAGGg -3'
miRNA:   3'- cuCCuGCCG-----UUUG--AGGUGCAGGUCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.