miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29131 5' -56.4 NC_006146.1 + 40018 0.7 0.696844
Target:  5'- -gGCGUAGcAGgGGGCCUGCUggggGCCg- -3'
miRNA:   3'- gaCGCAUCuUCaUCCGGACGA----CGGgu -5'
29131 5' -56.4 NC_006146.1 + 149262 0.68 0.811664
Target:  5'- uCUGggacUGUAGAGGgagaggcaGGGCCUGUaGCCCGu -3'
miRNA:   3'- -GAC----GCAUCUUCa-------UCCGGACGaCGGGU- -5'
29131 5' -56.4 NC_006146.1 + 146184 0.68 0.811664
Target:  5'- uCUGggacUGUAGAGGgagaggcaGGGCCUGUaGCCCGu -3'
miRNA:   3'- -GAC----GCAUCUUCa-------UCCGGACGaCGGGU- -5'
29131 5' -56.4 NC_006146.1 + 143106 0.68 0.811664
Target:  5'- uCUGggacUGUAGAGGgagaggcaGGGCCUGUaGCCCGu -3'
miRNA:   3'- -GAC----GCAUCUUCa-------UCCGGACGaCGGGU- -5'
29131 5' -56.4 NC_006146.1 + 40361 0.68 0.811664
Target:  5'- uCUGCGgcGGAGaAGGCCcccuggucGCcGCCCGg -3'
miRNA:   3'- -GACGCauCUUCaUCCGGa-------CGaCGGGU- -5'
29131 5' -56.4 NC_006146.1 + 23768 0.68 0.784577
Target:  5'- -cGCGgccgAGAAuGgcGGCCUGCgcgucugggGCCCGc -3'
miRNA:   3'- gaCGCa---UCUU-CauCCGGACGa--------CGGGU- -5'
29131 5' -56.4 NC_006146.1 + 36966 0.68 0.765813
Target:  5'- aCUGCGUcacuGUAGGUgaaCUGCgGCCCAc -3'
miRNA:   3'- -GACGCAucuuCAUCCG---GACGaCGGGU- -5'
29131 5' -56.4 NC_006146.1 + 139551 0.69 0.756246
Target:  5'- gCUGCGUGuguuGAGUauaaugAGGCCUGUaaGCCCAa -3'
miRNA:   3'- -GACGCAUc---UUCA------UCCGGACGa-CGGGU- -5'
29131 5' -56.4 NC_006146.1 + 36656 0.69 0.750451
Target:  5'- -gGCGcGGggGUucucugaggcuacauGGGCCUGCaGUCCAc -3'
miRNA:   3'- gaCGCaUCuuCA---------------UCCGGACGaCGGGU- -5'
29131 5' -56.4 NC_006146.1 + 152340 0.68 0.811664
Target:  5'- uCUGggacUGUAGAGGgagaggcaGGGCCUGUaGCCCGu -3'
miRNA:   3'- -GAC----GCAUCUUCa-------UCCGGACGaCGGGU- -5'
29131 5' -56.4 NC_006146.1 + 155418 0.68 0.811664
Target:  5'- uCUGggacUGUAGAGGgagaggcaGGGCCUGUaGCCCGu -3'
miRNA:   3'- -GAC----GCAUCUUCa-------UCCGGACGaCGGGU- -5'
29131 5' -56.4 NC_006146.1 + 158497 0.68 0.811664
Target:  5'- uCUGggacUGUAGAGGgagaggcaGGGCCUGUaGCCCGu -3'
miRNA:   3'- -GAC----GCAUCUUCa-------UCCGGACGaCGGGU- -5'
29131 5' -56.4 NC_006146.1 + 139428 0.66 0.89679
Target:  5'- gCUGUuuaGUAGGAGaAGGCCcccacGgUGCCCGg -3'
miRNA:   3'- -GACG---CAUCUUCaUCCGGa----CgACGGGU- -5'
29131 5' -56.4 NC_006146.1 + 24210 0.66 0.87609
Target:  5'- cCUGCG-AGGuucuGUugGGGCCgggGCcGCCCAc -3'
miRNA:   3'- -GACGCaUCUu---CA--UCCGGa--CGaCGGGU- -5'
29131 5' -56.4 NC_006146.1 + 120525 0.66 0.87609
Target:  5'- -cGCGUGGAugcGgcGGCgggaCUGCUGgCCAa -3'
miRNA:   3'- gaCGCAUCUu--CauCCG----GACGACgGGU- -5'
29131 5' -56.4 NC_006146.1 + 135289 0.66 0.87609
Target:  5'- ---aGUGGggGgcuaAGGCa-GCUGCCCAc -3'
miRNA:   3'- gacgCAUCuuCa---UCCGgaCGACGGGU- -5'
29131 5' -56.4 NC_006146.1 + 65082 0.67 0.853412
Target:  5'- -cGCGgggcAGGAG-GGGCCcuauucUGCUGCCUAc -3'
miRNA:   3'- gaCGCa---UCUUCaUCCGG------ACGACGGGU- -5'
29131 5' -56.4 NC_006146.1 + 42538 0.67 0.845439
Target:  5'- -gGCGUacuGGGAGgGGGCCUGUccGUCCGu -3'
miRNA:   3'- gaCGCA---UCUUCaUCCGGACGa-CGGGU- -5'
29131 5' -56.4 NC_006146.1 + 154681 0.67 0.83727
Target:  5'- -gGCcUGGGAGUccGGgguguugaGCCUGCUGCCCc -3'
miRNA:   3'- gaCGcAUCUUCA--UC--------CGGACGACGGGu -5'
29131 5' -56.4 NC_006146.1 + 51178 0.68 0.811664
Target:  5'- -gGUGUGGAAGgGGGUCUGCggGCUg- -3'
miRNA:   3'- gaCGCAUCUUCaUCCGGACGa-CGGgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.