miRNA display CGI


Results 1 - 20 of 514 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29132 5' -61.8 NC_006146.1 + 137467 0.66 0.730115
Target:  5'- ---gCACCCgGaGCC-CCAGGACCGa- -3'
miRNA:   3'- agugGUGGGgC-CGGuGGUCCUGGUcc -5'
29132 5' -61.8 NC_006146.1 + 31769 0.66 0.730115
Target:  5'- aCACUGCCCCcaccugcGCCAUCGGaGCCAGc -3'
miRNA:   3'- aGUGGUGGGGc------CGGUGGUCcUGGUCc -5'
29132 5' -61.8 NC_006146.1 + 2405 0.66 0.730115
Target:  5'- cUCugUugguCCCCGGCC-CCccGACCGuGGa -3'
miRNA:   3'- -AGugGu---GGGGCCGGuGGucCUGGU-CC- -5'
29132 5' -61.8 NC_006146.1 + 97823 0.66 0.730115
Target:  5'- cUguCCACCCUGGUgaagUACCAcGACCuGGa -3'
miRNA:   3'- -AguGGUGGGGCCG----GUGGUcCUGGuCC- -5'
29132 5' -61.8 NC_006146.1 + 154702 0.66 0.730115
Target:  5'- gUCugCGCCCagaugcaGcCCACCAGGgcgGCCAGc -3'
miRNA:   3'- -AGugGUGGGg------CcGGUGGUCC---UGGUCc -5'
29132 5' -61.8 NC_006146.1 + 44297 0.66 0.730115
Target:  5'- cCACCGCCaaaCCGGUagUgGGGGCUGGGg -3'
miRNA:   3'- aGUGGUGG---GGCCGguGgUCCUGGUCC- -5'
29132 5' -61.8 NC_006146.1 + 65710 0.66 0.730115
Target:  5'- gCACCcccggcuccccgGCCCCGGUCACUggacGGugCGGc -3'
miRNA:   3'- aGUGG------------UGGGGCCGGUGGu---CCugGUCc -5'
29132 5' -61.8 NC_006146.1 + 92937 0.66 0.730115
Target:  5'- gCACCuCCaaGGCCACCGGcuCCGGc -3'
miRNA:   3'- aGUGGuGGggCCGGUGGUCcuGGUCc -5'
29132 5' -61.8 NC_006146.1 + 13370 0.66 0.730115
Target:  5'- -aGCCGCCCUcgGGgC-CCAGGGCCccuaguccagAGGa -3'
miRNA:   3'- agUGGUGGGG--CCgGuGGUCCUGG----------UCC- -5'
29132 5' -61.8 NC_006146.1 + 13848 0.66 0.730115
Target:  5'- -gGCCggagggACCCCGGCgGCCcGGuguGCCAGc -3'
miRNA:   3'- agUGG------UGGGGCCGgUGGuCC---UGGUCc -5'
29132 5' -61.8 NC_006146.1 + 167636 0.66 0.730115
Target:  5'- gUC-CCGCggggCCCGGCgCguGCCGGGGgcCCGGGg -3'
miRNA:   3'- -AGuGGUG----GGGCCG-G--UGGUCCU--GGUCC- -5'
29132 5' -61.8 NC_006146.1 + 71754 0.66 0.730115
Target:  5'- cCGCCACCugCCGGUCGCUGGaGCCccuguGGa -3'
miRNA:   3'- aGUGGUGG--GGCCGGUGGUCcUGGu----CC- -5'
29132 5' -61.8 NC_006146.1 + 711 0.66 0.730115
Target:  5'- cCGCCagGCCCCGGCC-CCGcccUCGGGa -3'
miRNA:   3'- aGUGG--UGGGGCCGGuGGUccuGGUCC- -5'
29132 5' -61.8 NC_006146.1 + 1642 0.66 0.730115
Target:  5'- cCGCCagGCCCCGGCC-CCGcccUCGGGa -3'
miRNA:   3'- aGUGG--UGGGGCCGGuGGUccuGGUCC- -5'
29132 5' -61.8 NC_006146.1 + 2574 0.66 0.730115
Target:  5'- cCGCCagGCCCCGGCC-CCGcccUCGGGa -3'
miRNA:   3'- aGUGG--UGGGGCCGGuGGUccuGGUCC- -5'
29132 5' -61.8 NC_006146.1 + 3506 0.66 0.730115
Target:  5'- cCGCCagGCCCCGGCC-CCGcccUCGGGa -3'
miRNA:   3'- aGUGG--UGGGGCCGGuGGUccuGGUCC- -5'
29132 5' -61.8 NC_006146.1 + 37850 0.66 0.730115
Target:  5'- -aACCACCCUGGagaCGCCAGacguACCcGGc -3'
miRNA:   3'- agUGGUGGGGCCg--GUGGUCc---UGGuCC- -5'
29132 5' -61.8 NC_006146.1 + 43701 0.66 0.730115
Target:  5'- -gGCCACUaCGGCguCCAGGuCCuGGc -3'
miRNA:   3'- agUGGUGGgGCCGguGGUCCuGGuCC- -5'
29132 5' -61.8 NC_006146.1 + 104100 0.66 0.730115
Target:  5'- aCuCCGCCUCaugcGCCGCCuGGGCCcGGu -3'
miRNA:   3'- aGuGGUGGGGc---CGGUGGuCCUGGuCC- -5'
29132 5' -61.8 NC_006146.1 + 137807 0.66 0.730115
Target:  5'- -gGCCA-CCCGGCUGCCccagagccgcAGGGCCGa- -3'
miRNA:   3'- agUGGUgGGGCCGGUGG----------UCCUGGUcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.