miRNA display CGI


Results 1 - 20 of 514 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29132 5' -61.8 NC_006146.1 + 169399 0.71 0.413851
Target:  5'- gCACCACCcaaacgaggCCGGCUGCCAuGG-UCAGGa -3'
miRNA:   3'- aGUGGUGG---------GGCCGGUGGU-CCuGGUCC- -5'
29132 5' -61.8 NC_006146.1 + 168141 0.68 0.605261
Target:  5'- aCAUCcggGCUUgGGCCugCgAGGGCCGGGu -3'
miRNA:   3'- aGUGG---UGGGgCCGGugG-UCCUGGUCC- -5'
29132 5' -61.8 NC_006146.1 + 167636 0.66 0.730115
Target:  5'- gUC-CCGCggggCCCGGCgCguGCCGGGGgcCCGGGg -3'
miRNA:   3'- -AGuGGUG----GGGCCG-G--UGGUCCU--GGUCC- -5'
29132 5' -61.8 NC_006146.1 + 166394 0.67 0.663424
Target:  5'- gUCACC-CCCCgcuGGcCCGCCAGuGCCAu- -3'
miRNA:   3'- -AGUGGuGGGG---CC-GGUGGUCcUGGUcc -5'
29132 5' -61.8 NC_006146.1 + 166233 0.68 0.557216
Target:  5'- cCcCCGCCUCGcCCACCcGGcCCAGGa -3'
miRNA:   3'- aGuGGUGGGGCcGGUGGuCCuGGUCC- -5'
29132 5' -61.8 NC_006146.1 + 165939 0.67 0.657619
Target:  5'- cCGCCAggaggcucucguggcCCCUGGUCcCCGGGGCaCAGa -3'
miRNA:   3'- aGUGGU---------------GGGGCCGGuGGUCCUG-GUCc -5'
29132 5' -61.8 NC_006146.1 + 165696 0.69 0.51958
Target:  5'- cCugCACCCCuaGCUcccCCAGGcCCAGGg -3'
miRNA:   3'- aGugGUGGGGc-CGGu--GGUCCuGGUCC- -5'
29132 5' -61.8 NC_006146.1 + 164487 0.66 0.701835
Target:  5'- aCAUgGCCCUgGGCCAaaGGGACCccauGGc -3'
miRNA:   3'- aGUGgUGGGG-CCGGUggUCCUGGu---CC- -5'
29132 5' -61.8 NC_006146.1 + 164194 0.7 0.492022
Target:  5'- uUCACCACCCgGGaCUuguacCCGGGACgGGu -3'
miRNA:   3'- -AGUGGUGGGgCC-GGu----GGUCCUGgUCc -5'
29132 5' -61.8 NC_006146.1 + 164174 0.71 0.43057
Target:  5'- -gAUCACCCgGGUCACCuuccGGACCuuguGGg -3'
miRNA:   3'- agUGGUGGGgCCGGUGGu---CCUGGu---CC- -5'
29132 5' -61.8 NC_006146.1 + 162389 0.69 0.528902
Target:  5'- gCGCCcgcGCCCgGGaCC-CCGguGGGCCAGGa -3'
miRNA:   3'- aGUGG---UGGGgCC-GGuGGU--CCUGGUCC- -5'
29132 5' -61.8 NC_006146.1 + 160518 0.69 0.501136
Target:  5'- gCACCACCCUGaGCCGC---GACCAGu -3'
miRNA:   3'- aGUGGUGGGGC-CGGUGgucCUGGUCc -5'
29132 5' -61.8 NC_006146.1 + 159734 0.66 0.730115
Target:  5'- gCGcCCGCCUuugaagcaauuuCGGCCccuguguuuuuACCuGGGCCGGGg -3'
miRNA:   3'- aGU-GGUGGG------------GCCGG-----------UGGuCCUGGUCC- -5'
29132 5' -61.8 NC_006146.1 + 159470 0.79 0.139801
Target:  5'- cCGCCACCuuGGCCACCuuGGCCuGGu -3'
miRNA:   3'- aGUGGUGGggCCGGUGGucCUGGuCC- -5'
29132 5' -61.8 NC_006146.1 + 158172 0.7 0.456373
Target:  5'- gCACCACCuuGGCCuCCuuGGCCgucAGGa -3'
miRNA:   3'- aGUGGUGGggCCGGuGGucCUGG---UCC- -5'
29132 5' -61.8 NC_006146.1 + 158115 0.67 0.653746
Target:  5'- aCGuCCGCCCCugcagGGCCGcguCCAGGuCCGGc -3'
miRNA:   3'- aGU-GGUGGGG-----CCGGU---GGUCCuGGUCc -5'
29132 5' -61.8 NC_006146.1 + 157956 0.83 0.076844
Target:  5'- -aGCUACCCCaaGGCCACCgggcGGGGCCAGGg -3'
miRNA:   3'- agUGGUGGGG--CCGGUGG----UCCUGGUCC- -5'
29132 5' -61.8 NC_006146.1 + 157783 0.67 0.624646
Target:  5'- -gGCCcgggagcCCCCGuCCACaaaCAGGGCCAGGu -3'
miRNA:   3'- agUGGu------GGGGCcGGUG---GUCCUGGUCC- -5'
29132 5' -61.8 NC_006146.1 + 157633 0.72 0.35115
Target:  5'- gCACCGCCUgGGUcuugggCACCAgccccuGGACCAGGc -3'
miRNA:   3'- aGUGGUGGGgCCG------GUGGU------CCUGGUCC- -5'
29132 5' -61.8 NC_006146.1 + 157591 0.68 0.576333
Target:  5'- cCACCGCCCUGGUgcCCAGcACguGGg -3'
miRNA:   3'- aGUGGUGGGGCCGguGGUCcUGguCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.