miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29133 5' -61.6 NC_006146.1 + 137597 0.66 0.720621
Target:  5'- aGCcccAGGaCCgaGCGGCGgCGCAGCGg -3'
miRNA:   3'- cCGu--UCCaGGggCGCCGCaGCGUCGU- -5'
29133 5' -61.6 NC_006146.1 + 137466 0.66 0.720621
Target:  5'- uGCAcccGGagCCCCaggaccgaGCGGCGgCGCAGCGg -3'
miRNA:   3'- cCGUu--CCa-GGGG--------CGCCGCaGCGUCGU- -5'
29133 5' -61.6 NC_006146.1 + 159246 0.66 0.720621
Target:  5'- uGGCGAGGaCCCCGCaaugaggauccuGGgGUCGuUGGUc -3'
miRNA:   3'- -CCGUUCCaGGGGCG------------CCgCAGC-GUCGu -5'
29133 5' -61.6 NC_006146.1 + 219 0.66 0.71112
Target:  5'- cGCGAcGGUCCCCGgGGCGcCcCuGGCc -3'
miRNA:   3'- cCGUU-CCAGGGGCgCCGCaGcG-UCGu -5'
29133 5' -61.6 NC_006146.1 + 32037 0.66 0.710166
Target:  5'- aGGCGcuggcccAGGUCaugaCCCG-GGCGUgGCgAGCAu -3'
miRNA:   3'- -CCGU-------UCCAG----GGGCgCCGCAgCG-UCGU- -5'
29133 5' -61.6 NC_006146.1 + 44864 0.66 0.700598
Target:  5'- uGGC-GGGUCCCCGCugagaagccccugGGC-UCGCgauGGUAc -3'
miRNA:   3'- -CCGuUCCAGGGGCG-------------CCGcAGCG---UCGU- -5'
29133 5' -61.6 NC_006146.1 + 135868 0.66 0.691941
Target:  5'- aGGCGagugacAGGUCaugaCCCG-GGCGUgGCgAGCAu -3'
miRNA:   3'- -CCGU------UCCAG----GGGCgCCGCAgCG-UCGU- -5'
29133 5' -61.6 NC_006146.1 + 76575 0.66 0.691941
Target:  5'- aGGaCAuGGUCCCCGUGGgGacCG-AGCAg -3'
miRNA:   3'- -CC-GUuCCAGGGGCGCCgCa-GCgUCGU- -5'
29133 5' -61.6 NC_006146.1 + 58509 0.66 0.691941
Target:  5'- aGGCAcGGcagcCCCUGCGGCGUC-CA-CAa -3'
miRNA:   3'- -CCGUuCCa---GGGGCGCCGCAGcGUcGU- -5'
29133 5' -61.6 NC_006146.1 + 21421 0.66 0.691941
Target:  5'- gGGCAGGGUCCCCaUGGgGgaGCucuGCu -3'
miRNA:   3'- -CCGUUCCAGGGGcGCCgCagCGu--CGu -5'
29133 5' -61.6 NC_006146.1 + 33083 0.66 0.691941
Target:  5'- uGGCucGG-CCCUGCGGC-UCugggGCAGCc -3'
miRNA:   3'- -CCGuuCCaGGGGCGCCGcAG----CGUCGu -5'
29133 5' -61.6 NC_006146.1 + 66703 0.66 0.691941
Target:  5'- cGGCuugcGG-CCCCGUGGgGgCGCAGaCGg -3'
miRNA:   3'- -CCGuu--CCaGGGGCGCCgCaGCGUC-GU- -5'
29133 5' -61.6 NC_006146.1 + 93939 0.66 0.68228
Target:  5'- cGGCGGGG-CUCCGCucuccgucccaGGCGaccuccaGCGGCAg -3'
miRNA:   3'- -CCGUUCCaGGGGCG-----------CCGCag-----CGUCGU- -5'
29133 5' -61.6 NC_006146.1 + 117375 0.66 0.68228
Target:  5'- ----cGGUCCUCGCGGCcuucacacgCGCGGCc -3'
miRNA:   3'- ccguuCCAGGGGCGCCGca-------GCGUCGu -5'
29133 5' -61.6 NC_006146.1 + 31824 0.66 0.68228
Target:  5'- aGGCGAGG--CCCGUGGCcaaaGUC-CAGCu -3'
miRNA:   3'- -CCGUUCCagGGGCGCCG----CAGcGUCGu -5'
29133 5' -61.6 NC_006146.1 + 40374 0.66 0.68228
Target:  5'- aGGCccccuGGUCgCCGCccGGCG-CGUAGUAg -3'
miRNA:   3'- -CCGuu---CCAGgGGCG--CCGCaGCGUCGU- -5'
29133 5' -61.6 NC_006146.1 + 108882 0.66 0.68228
Target:  5'- cGGCAgAGGccgagCgCCGCGGCcagcgaGUCaGCAGCGa -3'
miRNA:   3'- -CCGU-UCCa----GgGGCGCCG------CAG-CGUCGU- -5'
29133 5' -61.6 NC_006146.1 + 154173 0.66 0.672581
Target:  5'- uGGUucuguAGGUccacaguauccaCCCCGgGGCGUCGUGGa- -3'
miRNA:   3'- -CCGu----UCCA------------GGGGCgCCGCAGCGUCgu -5'
29133 5' -61.6 NC_006146.1 + 43366 0.67 0.662851
Target:  5'- uGGCAGGGgguggCUuaGCGGgGgcaGCAGCGg -3'
miRNA:   3'- -CCGUUCCa----GGggCGCCgCag-CGUCGU- -5'
29133 5' -61.6 NC_006146.1 + 64418 0.67 0.662851
Target:  5'- aGGCcGGGgCCaCgGCGGCGUaCGCuGCc -3'
miRNA:   3'- -CCGuUCCaGG-GgCGCCGCA-GCGuCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.