miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29134 3' -48.7 NC_006146.1 + 167561 0.66 0.999467
Target:  5'- -cACgugUGGAGgcccgCggAGAGGCCGUGUg -3'
miRNA:   3'- caUGa--ACCUUaa---GagUUUCCGGCGCG- -5'
29134 3' -48.7 NC_006146.1 + 168493 0.66 0.999467
Target:  5'- -cACgugUGGAGgcccgCggAGAGGCCGUGUg -3'
miRNA:   3'- caUGa--ACCUUaa---GagUUUCCGGCGCG- -5'
29134 3' -48.7 NC_006146.1 + 169425 0.66 0.999467
Target:  5'- -cACgugUGGAGgcccgCggAGAGGCCGUGUg -3'
miRNA:   3'- caUGa--ACCUUaa---GagUUUCCGGCGCG- -5'
29134 3' -48.7 NC_006146.1 + 117979 0.66 0.999467
Target:  5'- ----aUGaAAUUCUCAAAGG-UGCGCa -3'
miRNA:   3'- caugaACcUUAAGAGUUUCCgGCGCG- -5'
29134 3' -48.7 NC_006146.1 + 170356 0.66 0.999467
Target:  5'- -cACgugUGGAGgcccgCggAGAGGCCGUGUg -3'
miRNA:   3'- caUGa--ACCUUaa---GagUUUCCGGCGCG- -5'
29134 3' -48.7 NC_006146.1 + 75794 0.66 0.999467
Target:  5'- cUACUcGGGcgUCUCGggcgccgccuucGAGGCCcUGCg -3'
miRNA:   3'- cAUGAaCCUuaAGAGU------------UUCCGGcGCG- -5'
29134 3' -48.7 NC_006146.1 + 123055 0.66 0.999338
Target:  5'- -cGCUggaGGAgaggGUcCUCGAGaGCCGCGCu -3'
miRNA:   3'- caUGAa--CCU----UAaGAGUUUcCGGCGCG- -5'
29134 3' -48.7 NC_006146.1 + 11772 0.66 0.999338
Target:  5'- -gGCUuccUGGAAcaaaCUCAgGAGGCCGUGa -3'
miRNA:   3'- caUGA---ACCUUaa--GAGU-UUCCGGCGCg -5'
29134 3' -48.7 NC_006146.1 + 95095 0.66 0.999338
Target:  5'- -cGCagGGc---CUCGAAGGCgGCGCc -3'
miRNA:   3'- caUGaaCCuuaaGAGUUUCCGgCGCG- -5'
29134 3' -48.7 NC_006146.1 + 89462 0.66 0.999338
Target:  5'- gGUGCagcgGGAGUUUUCu-GGGuuGCGg -3'
miRNA:   3'- -CAUGaa--CCUUAAGAGuuUCCggCGCg -5'
29134 3' -48.7 NC_006146.1 + 53494 0.66 0.999338
Target:  5'- -gGCcgGGggUgcggucuggCUCuggcugcGGGCCGCGCg -3'
miRNA:   3'- caUGaaCCuuAa--------GAGuu-----UCCGGCGCG- -5'
29134 3' -48.7 NC_006146.1 + 93462 0.66 0.999309
Target:  5'- -aGCUUGGAGcugaugccauagUCUCGGAuGCCGCa- -3'
miRNA:   3'- caUGAACCUUa-----------AGAGUUUcCGGCGcg -5'
29134 3' -48.7 NC_006146.1 + 74223 0.66 0.999183
Target:  5'- cGUGC-UGGAGaccUUCUUcuucAGGCCcuGCGCg -3'
miRNA:   3'- -CAUGaACCUU---AAGAGuu--UCCGG--CGCG- -5'
29134 3' -48.7 NC_006146.1 + 170061 0.66 0.998997
Target:  5'- -----gGGAGggC-CcGGGGCCGCGCg -3'
miRNA:   3'- caugaaCCUUaaGaGuUUCCGGCGCG- -5'
29134 3' -48.7 NC_006146.1 + 167265 0.66 0.998997
Target:  5'- -----gGGAGggC-CcGGGGCCGCGCg -3'
miRNA:   3'- caugaaCCUUaaGaGuUUCCGGCGCG- -5'
29134 3' -48.7 NC_006146.1 + 150517 0.66 0.998997
Target:  5'- -gGCaUGGGuaggauaaaGUUCUCcuucuGGGCCGCGg -3'
miRNA:   3'- caUGaACCU---------UAAGAGuu---UCCGGCGCg -5'
29134 3' -48.7 NC_006146.1 + 14325 0.66 0.998997
Target:  5'- cUGCU-GGAGaaCUCAcgcAGGGCCGuUGCg -3'
miRNA:   3'- cAUGAaCCUUaaGAGU---UUCCGGC-GCG- -5'
29134 3' -48.7 NC_006146.1 + 168197 0.66 0.998997
Target:  5'- -----gGGAGggC-CcGGGGCCGCGCg -3'
miRNA:   3'- caugaaCCUUaaGaGuUUCCGGCGCG- -5'
29134 3' -48.7 NC_006146.1 + 169129 0.66 0.998997
Target:  5'- -----gGGAGggC-CcGGGGCCGCGCg -3'
miRNA:   3'- caugaaCCUUaaGaGuUUCCGGCGCG- -5'
29134 3' -48.7 NC_006146.1 + 155222 0.66 0.998776
Target:  5'- -gGCUguGAGgcCUCGAGGGCCGgGUu -3'
miRNA:   3'- caUGAacCUUaaGAGUUUCCGGCgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.