miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29134 5' -63.1 NC_006146.1 + 123571 0.66 0.649295
Target:  5'- -gGCGCCUGgcccggcuggaggCCaucaUCCAGGaGGCCCGGg -3'
miRNA:   3'- ugCGCGGACa------------GGa---GGGUCC-CUGGGCU- -5'
29134 5' -63.1 NC_006146.1 + 115246 0.66 0.649295
Target:  5'- aACGcCGCCUGgcUCCggcugcugcacccCUCGGGGGCCCu- -3'
miRNA:   3'- -UGC-GCGGAC--AGGa------------GGGUCCCUGGGcu -5'
29134 5' -63.1 NC_006146.1 + 43326 0.66 0.643497
Target:  5'- gGCGCgGCCUcggCCgCCCAGGGccagcaggcgcaGCCCGu -3'
miRNA:   3'- -UGCG-CGGAca-GGaGGGUCCC------------UGGGCu -5'
29134 5' -63.1 NC_006146.1 + 554 0.66 0.643497
Target:  5'- cGCGgGCCUccacacguggCCUCCCaggagAGGGGCCgGGg -3'
miRNA:   3'- -UGCgCGGAca--------GGAGGG-----UCCCUGGgCU- -5'
29134 5' -63.1 NC_006146.1 + 1485 0.66 0.643497
Target:  5'- cGCGgGCCUccacacguggCCUCCCaggagAGGGGCCgGGg -3'
miRNA:   3'- -UGCgCGGAca--------GGAGGG-----UCCCUGGgCU- -5'
29134 5' -63.1 NC_006146.1 + 2417 0.66 0.643497
Target:  5'- cGCGgGCCUccacacguggCCUCCCaggagAGGGGCCgGGg -3'
miRNA:   3'- -UGCgCGGAca--------GGAGGG-----UCCCUGGgCU- -5'
29134 5' -63.1 NC_006146.1 + 3349 0.66 0.643497
Target:  5'- cGCGgGCCUccacacguggCCUCCCaggagAGGGGCCgGGg -3'
miRNA:   3'- -UGCgCGGAca--------GGAGGG-----UCCCUGGgCU- -5'
29134 5' -63.1 NC_006146.1 + 14059 0.66 0.643497
Target:  5'- -aGCGCCggcuggcugcgGUCCUCCCGGGu-CUgGAg -3'
miRNA:   3'- ugCGCGGa----------CAGGAGGGUCCcuGGgCU- -5'
29134 5' -63.1 NC_006146.1 + 137238 0.66 0.643497
Target:  5'- -gGgGCCUGgggUCCCGGGGACCa-- -3'
miRNA:   3'- ugCgCGGACaggAGGGUCCCUGGgcu -5'
29134 5' -63.1 NC_006146.1 + 156700 0.66 0.64253
Target:  5'- uGCGCGCCaccgCCUCCCcguccaggcuccgGGGGuccaGCCUGGc -3'
miRNA:   3'- -UGCGCGGaca-GGAGGG-------------UCCC----UGGGCU- -5'
29134 5' -63.1 NC_006146.1 + 262 0.66 0.633827
Target:  5'- uGCGCGCCcacCCgugagggggagCCCGGGaaGACCCGGg -3'
miRNA:   3'- -UGCGCGGacaGGa----------GGGUCC--CUGGGCU- -5'
29134 5' -63.1 NC_006146.1 + 150711 0.66 0.633827
Target:  5'- -aGCcuCCUGcgCC-CCCGGGGGCCCu- -3'
miRNA:   3'- ugCGc-GGACa-GGaGGGUCCCUGGGcu -5'
29134 5' -63.1 NC_006146.1 + 167650 0.66 0.633827
Target:  5'- -gGCGCgUG-CCgggggCCCGGGGgcgugucccgcgACCCGAg -3'
miRNA:   3'- ugCGCGgACaGGa----GGGUCCC------------UGGGCU- -5'
29134 5' -63.1 NC_006146.1 + 33306 0.66 0.633827
Target:  5'- uGCGcCGCCgcucgGUCCUggggcUCCGGGG-UCCGGg -3'
miRNA:   3'- -UGC-GCGGa----CAGGA-----GGGUCCCuGGGCU- -5'
29134 5' -63.1 NC_006146.1 + 66411 0.66 0.633827
Target:  5'- cUGCGCUUGUCCUCCUcuuccGGGuGACa-GAc -3'
miRNA:   3'- uGCGCGGACAGGAGGG-----UCC-CUGggCU- -5'
29134 5' -63.1 NC_006146.1 + 9464 0.66 0.624157
Target:  5'- cACGCGCCuUGggUUCCCGcGGGGCCa-- -3'
miRNA:   3'- -UGCGCGG-ACagGAGGGU-CCCUGGgcu -5'
29134 5' -63.1 NC_006146.1 + 48229 0.66 0.624157
Target:  5'- gGCGCGCCUGggugagcgCCgCgCGGaGGGCCCc- -3'
miRNA:   3'- -UGCGCGGACa-------GGaGgGUC-CCUGGGcu -5'
29134 5' -63.1 NC_006146.1 + 78942 0.66 0.624156
Target:  5'- cCGUuuGCUUGUCCUCCguggUAGGGGuCCUGGc -3'
miRNA:   3'- uGCG--CGGACAGGAGG----GUCCCU-GGGCU- -5'
29134 5' -63.1 NC_006146.1 + 42551 0.66 0.621256
Target:  5'- -gGgGCCUGUCCguccgucggcuucaUCuCCAGGGccagcaggaccaGCCCGGg -3'
miRNA:   3'- ugCgCGGACAGG--------------AG-GGUCCC------------UGGGCU- -5'
29134 5' -63.1 NC_006146.1 + 136706 0.66 0.614491
Target:  5'- gGCGCGaggucCCUG-CCUggCCCAGGG-UCCGGc -3'
miRNA:   3'- -UGCGC-----GGACaGGA--GGGUCCCuGGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.