miRNA display CGI


Results 1 - 20 of 309 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29135 3' -55.3 NC_006146.1 + 115390 0.66 0.957072
Target:  5'- gCCCUGGCcgcucgcguGCAGgaGGCAGcu-GGCGGc -3'
miRNA:   3'- -GGGACCGuu-------UGUC--CCGUCucuCUGCC- -5'
29135 3' -55.3 NC_006146.1 + 90071 0.66 0.957072
Target:  5'- gCCUaggaGGCGGuGCAGGGgGGAGcAGugGa -3'
miRNA:   3'- gGGA----CCGUU-UGUCCCgUCUC-UCugCc -5'
29135 3' -55.3 NC_006146.1 + 54799 0.66 0.956699
Target:  5'- gCCUUgGGCAgcucguuggagagGACccGGCGGAG-GGCGGg -3'
miRNA:   3'- -GGGA-CCGU-------------UUGucCCGUCUCuCUGCC- -5'
29135 3' -55.3 NC_006146.1 + 87176 0.66 0.953636
Target:  5'- cUCCUGGCAuacuauuugccaccCAGGGU-GAGAGGaGGa -3'
miRNA:   3'- -GGGACCGUuu------------GUCCCGuCUCUCUgCC- -5'
29135 3' -55.3 NC_006146.1 + 23361 0.66 0.953243
Target:  5'- gCCUGGCGcguggaAAUAGGGUcuaGGGGAcuGGCGu -3'
miRNA:   3'- gGGACCGU------UUGUCCCG---UCUCU--CUGCc -5'
29135 3' -55.3 NC_006146.1 + 13863 0.66 0.953243
Target:  5'- -aCUGGCGAccauugccuccaGCGGGaUAGAGuGGACGGc -3'
miRNA:   3'- ggGACCGUU------------UGUCCcGUCUC-UCUGCC- -5'
29135 3' -55.3 NC_006146.1 + 94008 0.66 0.953242
Target:  5'- cCUCUGGCucccacguGCGGcccGGCAGGGGcACGGc -3'
miRNA:   3'- -GGGACCGuu------UGUC---CCGUCUCUcUGCC- -5'
29135 3' -55.3 NC_006146.1 + 118456 0.66 0.953242
Target:  5'- cCCCUcuccagGGCGucGACcccaaacuggAGGGCAGAGGccacggucuuGACGGc -3'
miRNA:   3'- -GGGA------CCGU--UUG----------UCCCGUCUCU----------CUGCC- -5'
29135 3' -55.3 NC_006146.1 + 33214 0.66 0.953242
Target:  5'- cUCCUGGUGcucCGGGGCAGccGGGuggccgccGGCGGg -3'
miRNA:   3'- -GGGACCGUuu-GUCCCGUC--UCU--------CUGCC- -5'
29135 3' -55.3 NC_006146.1 + 101669 0.66 0.952847
Target:  5'- gCCCUGGggggaaaCGGGCuacGGGCGGcgcuAGAGGgGGg -3'
miRNA:   3'- -GGGACC-------GUUUGu--CCCGUC----UCUCUgCC- -5'
29135 3' -55.3 NC_006146.1 + 108610 0.66 0.952847
Target:  5'- uCCCaGGUAGggguccGCGGaGGCGGuggugaaGGAGAUGGa -3'
miRNA:   3'- -GGGaCCGUU------UGUC-CCGUC-------UCUCUGCC- -5'
29135 3' -55.3 NC_006146.1 + 110161 0.66 0.952847
Target:  5'- gUCUUGGCGGAucucugucCAGGGCcucagcgccgguuGGAGAuGCGGc -3'
miRNA:   3'- -GGGACCGUUU--------GUCCCG-------------UCUCUcUGCC- -5'
29135 3' -55.3 NC_006146.1 + 128436 0.66 0.94919
Target:  5'- aUCCgGGCcgcAGACcGGGCGG-GAGGgGGa -3'
miRNA:   3'- -GGGaCCG---UUUGuCCCGUCuCUCUgCC- -5'
29135 3' -55.3 NC_006146.1 + 71777 0.66 0.94919
Target:  5'- cCCCUGuGgAGACgccugaggccggAGGGCAGGcgcGGGACGu -3'
miRNA:   3'- -GGGAC-CgUUUG------------UCCCGUCU---CUCUGCc -5'
29135 3' -55.3 NC_006146.1 + 139792 0.66 0.94919
Target:  5'- gCCCUcGGUGguguuGAUGGGGguG-GAGugGGu -3'
miRNA:   3'- -GGGA-CCGU-----UUGUCCCguCuCUCugCC- -5'
29135 3' -55.3 NC_006146.1 + 104976 0.66 0.949189
Target:  5'- gCCUGGgGcucccGAgGGGGCucuGGGGAGACa- -3'
miRNA:   3'- gGGACCgU-----UUgUCCCG---UCUCUCUGcc -5'
29135 3' -55.3 NC_006146.1 + 122578 0.66 0.94793
Target:  5'- gCCUGGCccaccaccgccAGCaccuccgacgguggAGGGC-GAGGGGCGGa -3'
miRNA:   3'- gGGACCGu----------UUG--------------UCCCGuCUCUCUGCC- -5'
29135 3' -55.3 NC_006146.1 + 123084 0.66 0.94793
Target:  5'- gCUCUGGCAgcccgagcccaugaGACGGcGGUGGGcgcuAGACGGg -3'
miRNA:   3'- -GGGACCGU--------------UUGUC-CCGUCUc---UCUGCC- -5'
29135 3' -55.3 NC_006146.1 + 23964 0.66 0.94491
Target:  5'- cCCCgGGUcgGGugGGGGagcCGGAGAGGgGGc -3'
miRNA:   3'- -GGGaCCG--UUugUCCC---GUCUCUCUgCC- -5'
29135 3' -55.3 NC_006146.1 + 77832 0.66 0.94491
Target:  5'- ---cGGCGgagGGgGGGGCGGGGGGGUGGg -3'
miRNA:   3'- gggaCCGU---UUgUCCCGUCUCUCUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.