miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29141 3' -46.9 NC_006146.1 + 112870 0.66 0.999975
Target:  5'- aCUAUGCgc-UCGUAGGCcGGGCuCugCg -3'
miRNA:   3'- -GGUACGacaAGUAUUUGaCCUG-GugG- -5'
29141 3' -46.9 NC_006146.1 + 116642 0.66 0.999975
Target:  5'- aCCAUacaUGgcCAcAAACUGGGCgGCCa -3'
miRNA:   3'- -GGUAcg-ACaaGUaUUUGACCUGgUGG- -5'
29141 3' -46.9 NC_006146.1 + 121346 0.66 0.999966
Target:  5'- gCCAUGCUGggCcUGgccGGCgUGGccuCCGCCc -3'
miRNA:   3'- -GGUACGACaaGuAU---UUG-ACCu--GGUGG- -5'
29141 3' -46.9 NC_006146.1 + 59134 0.66 0.999962
Target:  5'- uCUGUGUUGUUgcgagaaaaugggcCAUGAcaaGGGCCACCa -3'
miRNA:   3'- -GGUACGACAA--------------GUAUUugaCCUGGUGG- -5'
29141 3' -46.9 NC_006146.1 + 136859 0.66 0.999954
Target:  5'- cCCcgGCcgg-CAUAGGCcccgGGACCACg -3'
miRNA:   3'- -GGuaCGacaaGUAUUUGa---CCUGGUGg -5'
29141 3' -46.9 NC_006146.1 + 52109 0.66 0.999938
Target:  5'- gCCAU-CUGUUCcccgucGCUGGAC-ACCa -3'
miRNA:   3'- -GGUAcGACAAGuauu--UGACCUGgUGG- -5'
29141 3' -46.9 NC_006146.1 + 114124 0.66 0.999938
Target:  5'- gUCGUGgUGUUCAUGucggaugaGGCUccGGACCAg- -3'
miRNA:   3'- -GGUACgACAAGUAU--------UUGA--CCUGGUgg -5'
29141 3' -46.9 NC_006146.1 + 77949 0.66 0.999938
Target:  5'- ---cGCUGUUUGgu--CUGGGCCggaGCCg -3'
miRNA:   3'- gguaCGACAAGUauuuGACCUGG---UGG- -5'
29141 3' -46.9 NC_006146.1 + 118013 0.66 0.999938
Target:  5'- aCCAUGCgGggCucgGGGCgcgcgaGGACCACg -3'
miRNA:   3'- -GGUACGaCaaGua-UUUGa-----CCUGGUGg -5'
29141 3' -46.9 NC_006146.1 + 122814 0.66 0.999936
Target:  5'- gCCGcGCUGUcggccgcCGUGAGCgaguacgUGGACCGCa -3'
miRNA:   3'- -GGUaCGACAa------GUAUUUG-------ACCUGGUGg -5'
29141 3' -46.9 NC_006146.1 + 75318 0.66 0.999918
Target:  5'- uUCAUGCUGaaCAUGAcCUcGGA-CGCCu -3'
miRNA:   3'- -GGUACGACaaGUAUUuGA-CCUgGUGG- -5'
29141 3' -46.9 NC_006146.1 + 110703 0.66 0.999918
Target:  5'- uCCAccUGCUGUUUGUGGAC-GaGGCCAa- -3'
miRNA:   3'- -GGU--ACGACAAGUAUUUGaC-CUGGUgg -5'
29141 3' -46.9 NC_006146.1 + 52471 0.67 0.999893
Target:  5'- gCCGUGCaGgaccUCGgccagGGACUGGACgACg -3'
miRNA:   3'- -GGUACGaCa---AGUa----UUUGACCUGgUGg -5'
29141 3' -46.9 NC_006146.1 + 105358 0.67 0.99986
Target:  5'- aCCGagGCUcugaGUu-GCUGGGCCACCa -3'
miRNA:   3'- -GGUa-CGAcaagUAuuUGACCUGGUGG- -5'
29141 3' -46.9 NC_006146.1 + 95931 0.67 0.99986
Target:  5'- aCCAUgaaGCUGaccgugCGUGAcCUGcuGACCACCa -3'
miRNA:   3'- -GGUA---CGACaa----GUAUUuGAC--CUGGUGG- -5'
29141 3' -46.9 NC_006146.1 + 10810 0.67 0.99986
Target:  5'- gCCAcGCUGggCAccGGCUacacGGGCCACa -3'
miRNA:   3'- -GGUaCGACaaGUauUUGA----CCUGGUGg -5'
29141 3' -46.9 NC_006146.1 + 120890 0.67 0.99986
Target:  5'- cCCcgGCUG--CAUcAACcGGAUCGCCu -3'
miRNA:   3'- -GGuaCGACaaGUAuUUGaCCUGGUGG- -5'
29141 3' -46.9 NC_006146.1 + 96007 0.67 0.999769
Target:  5'- aCGaGC-GUUaCGUGGACUGGaucuguGCCACCg -3'
miRNA:   3'- gGUaCGaCAA-GUAUUUGACC------UGGUGG- -5'
29141 3' -46.9 NC_006146.1 + 41390 0.67 0.999769
Target:  5'- --cUGCUGUUUcUGAGgUGGGCCugauguCCg -3'
miRNA:   3'- gguACGACAAGuAUUUgACCUGGu-----GG- -5'
29141 3' -46.9 NC_006146.1 + 124075 0.67 0.999769
Target:  5'- --uUGCcGUUgAUGGACaGGGCCACg -3'
miRNA:   3'- gguACGaCAAgUAUUUGaCCUGGUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.