Results 21 - 40 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29143 | 3' | -59.4 | NC_006146.1 | + | 118302 | 0.68 | 0.693766 |
Target: 5'- uGGCccAGCUGACgGacgugcCCAGCUCGguGa -3' miRNA: 3'- cCCGcaUCGACUGgC------GGUCGAGCguC- -5' |
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29143 | 3' | -59.4 | NC_006146.1 | + | 116805 | 0.69 | 0.634349 |
Target: 5'- aGGGCGUGGUggagGGCguccaggacgugUGCCGGgaCGCGGc -3' miRNA: 3'- -CCCGCAUCGa---CUG------------GCGGUCgaGCGUC- -5' |
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29143 | 3' | -59.4 | NC_006146.1 | + | 115368 | 0.66 | 0.79506 |
Target: 5'- cGGCGUGGCggcggagcuggaGGCCcugGCC-GCUCGCGu -3' miRNA: 3'- cCCGCAUCGa-----------CUGG---CGGuCGAGCGUc -5' |
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29143 | 3' | -59.4 | NC_006146.1 | + | 112353 | 0.69 | 0.624396 |
Target: 5'- aGGGCuccauGUAggccgccacGCUGACCgGCC-GCUUGCAGa -3' miRNA: 3'- -CCCG-----CAU---------CGACUGG-CGGuCGAGCGUC- -5' |
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29143 | 3' | -59.4 | NC_006146.1 | + | 108728 | 0.68 | 0.703546 |
Target: 5'- uGGGCGU-GCUGGuguCCGCCucCUCGgAGu -3' miRNA: 3'- -CCCGCAuCGACU---GGCGGucGAGCgUC- -5' |
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29143 | 3' | -59.4 | NC_006146.1 | + | 102915 | 0.68 | 0.693766 |
Target: 5'- uGGCGUGGCUgcgccccaaGAUCGUgGGCUgccugCGCAGc -3' miRNA: 3'- cCCGCAUCGA---------CUGGCGgUCGA-----GCGUC- -5' |
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29143 | 3' | -59.4 | NC_006146.1 | + | 102877 | 0.66 | 0.769935 |
Target: 5'- uGGuCGUGGCcgGGCC-CCAGUUUGCGc -3' miRNA: 3'- cCC-GCAUCGa-CUGGcGGUCGAGCGUc -5' |
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29143 | 3' | -59.4 | NC_006146.1 | + | 102037 | 0.67 | 0.742011 |
Target: 5'- aGGGCcaGGCUG-UCGCCAGCcUGCu- -3' miRNA: 3'- -CCCGcaUCGACuGGCGGUCGaGCGuc -5' |
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29143 | 3' | -59.4 | NC_006146.1 | + | 99161 | 0.72 | 0.452113 |
Target: 5'- cGGCagGUGGCgGAggGCCAGCUCGUAGa -3' miRNA: 3'- cCCG--CAUCGaCUggCGGUCGAGCGUC- -5' |
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29143 | 3' | -59.4 | NC_006146.1 | + | 92342 | 0.67 | 0.732509 |
Target: 5'- gGGGC--AGCUGAUauggGgCGGCUCGCAu -3' miRNA: 3'- -CCCGcaUCGACUGg---CgGUCGAGCGUc -5' |
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29143 | 3' | -59.4 | NC_006146.1 | + | 65022 | 0.66 | 0.769935 |
Target: 5'- aGGgGgcGCUGGCCGCUAuCUUGCc- -3' miRNA: 3'- cCCgCauCGACUGGCGGUcGAGCGuc -5' |
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29143 | 3' | -59.4 | NC_006146.1 | + | 64252 | 0.66 | 0.779023 |
Target: 5'- aGGaCGgccCUGACCaGCCGGC-CGCAGc -3' miRNA: 3'- cCC-GCaucGACUGG-CGGUCGaGCGUC- -5' |
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29143 | 3' | -59.4 | NC_006146.1 | + | 62382 | 0.66 | 0.796815 |
Target: 5'- aGGCcc--CUGGCCGuUCAGCUCGCGa -3' miRNA: 3'- cCCGcaucGACUGGC-GGUCGAGCGUc -5' |
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29143 | 3' | -59.4 | NC_006146.1 | + | 59311 | 0.69 | 0.6443 |
Target: 5'- cGGUGaccUGGCUGGCCGagaGGCUgGCGGu -3' miRNA: 3'- cCCGC---AUCGACUGGCgg-UCGAgCGUC- -5' |
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29143 | 3' | -59.4 | NC_006146.1 | + | 57144 | 0.66 | 0.769935 |
Target: 5'- gGGGCugGUGGCcGACCGCC-GCUuccaCGCc- -3' miRNA: 3'- -CCCG--CAUCGaCUGGCGGuCGA----GCGuc -5' |
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29143 | 3' | -59.4 | NC_006146.1 | + | 56856 | 0.66 | 0.773585 |
Target: 5'- gGGGCGgcagcuuuggcuggGGCUGGCgGCCcccguGUUCGgGGa -3' miRNA: 3'- -CCCGCa-------------UCGACUGgCGGu----CGAGCgUC- -5' |
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29143 | 3' | -59.4 | NC_006146.1 | + | 56591 | 0.68 | 0.693766 |
Target: 5'- cGGGCGccgAGCccGCCGCCGGUcuccUCGCc- -3' miRNA: 3'- -CCCGCa--UCGacUGGCGGUCG----AGCGuc -5' |
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29143 | 3' | -59.4 | NC_006146.1 | + | 56367 | 0.66 | 0.795939 |
Target: 5'- aGGCGUGGUggcgGagcaccGCCGCCGgguaagcguggccGCUCGCGa -3' miRNA: 3'- cCCGCAUCGa---C------UGGCGGU-------------CGAGCGUc -5' |
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29143 | 3' | -59.4 | NC_006146.1 | + | 55992 | 0.7 | 0.545534 |
Target: 5'- cGGCGUAGacggUGACCaGCCAGCgUCcCAGa -3' miRNA: 3'- cCCGCAUCg---ACUGG-CGGUCG-AGcGUC- -5' |
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29143 | 3' | -59.4 | NC_006146.1 | + | 55483 | 0.69 | 0.6443 |
Target: 5'- cGGGCGagaacgaGGCccGGCCGCCAGCUgccuccugcaCGCGa -3' miRNA: 3'- -CCCGCa------UCGa-CUGGCGGUCGA----------GCGUc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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