miRNA display CGI


Results 21 - 40 of 216 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29145 3' -53.2 NC_006146.1 + 167243 0.66 0.970791
Target:  5'- cGC-GGCCAGucCCUG-GAUgucggGGAGGGCc -3'
miRNA:   3'- -CGuUUGGUCucGGACgCUA-----UCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 167157 0.69 0.887593
Target:  5'- gGCAcuguGCCAGGGCCUuCGGgacgGGAGGccgGCg -3'
miRNA:   3'- -CGUu---UGGUCUCGGAcGCUa---UCUCC---CG- -5'
29145 3' -53.2 NC_006146.1 + 167035 0.66 0.978632
Target:  5'- -gAGACCAGcAGCUucucguucaUGCGAUcccagguccGGuAGGGCa -3'
miRNA:   3'- cgUUUGGUC-UCGG---------ACGCUA---------UC-UCCCG- -5'
29145 3' -53.2 NC_006146.1 + 166649 0.76 0.556482
Target:  5'- cGCGGacGCCAGAGCgaGCGGgaaGGGGGaGCg -3'
miRNA:   3'- -CGUU--UGGUCUCGgaCGCUa--UCUCC-CG- -5'
29145 3' -53.2 NC_006146.1 + 165780 0.68 0.923277
Target:  5'- aGCGAucaAUCAGAGCCa-CGGUggcacggccggcuaGGGGGGCg -3'
miRNA:   3'- -CGUU---UGGUCUCGGacGCUA--------------UCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 162030 0.73 0.731344
Target:  5'- -aAAACUgGGAGCCUGgGGgcGGGGGCa -3'
miRNA:   3'- cgUUUGG-UCUCGGACgCUauCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 161407 0.67 0.964533
Target:  5'- uGCAGAUCAuaGGCCUGUGccAGGcGGGUg -3'
miRNA:   3'- -CGUUUGGUc-UCGGACGCuaUCU-CCCG- -5'
29145 3' -53.2 NC_006146.1 + 160682 0.67 0.961076
Target:  5'- gGCAcauGACCAGGGCC---GGUAGAGG-Ca -3'
miRNA:   3'- -CGU---UUGGUCUCGGacgCUAUCUCCcG- -5'
29145 3' -53.2 NC_006146.1 + 160402 1.15 0.002213
Target:  5'- cGCAAACCAGAGCCUGCGAUAGAGGGCg -3'
miRNA:   3'- -CGUUUGGUCUCGGACGCUAUCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 159902 0.78 0.477189
Target:  5'- -gAGGCCGGGGCCcucgaaGAUGGGGGGCa -3'
miRNA:   3'- cgUUUGGUCUCGGacg---CUAUCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 157742 0.7 0.850084
Target:  5'- gGCAGGCCGGgucuugGGCCUGgGAgguccGGGGUg -3'
miRNA:   3'- -CGUUUGGUC------UCGGACgCUauc--UCCCG- -5'
29145 3' -53.2 NC_006146.1 + 157531 0.66 0.976215
Target:  5'- cGCAGACCAcgguGGUC-GCGGU-GAGGGa -3'
miRNA:   3'- -CGUUUGGUc---UCGGaCGCUAuCUCCCg -5'
29145 3' -53.2 NC_006146.1 + 157280 0.73 0.71224
Target:  5'- -gGGACCAGGGCCUccuggGCGucucugggucuggacUGGAGGGCc -3'
miRNA:   3'- cgUUUGGUCUCGGA-----CGCu--------------AUCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 156963 0.72 0.789262
Target:  5'- -gGAGCCGGGGCCU-CGG-GGAGGGa -3'
miRNA:   3'- cgUUUGGUCUCGGAcGCUaUCUCCCg -5'
29145 3' -53.2 NC_006146.1 + 156861 0.68 0.940303
Target:  5'- -aGGGCCuG-GCCUGCGggGGAcaGGGUg -3'
miRNA:   3'- cgUUUGGuCuCGGACGCuaUCU--CCCG- -5'
29145 3' -53.2 NC_006146.1 + 156700 0.66 0.970791
Target:  5'- uCGGGCU--GGCCUGCc--AGGGGGCa -3'
miRNA:   3'- cGUUUGGucUCGGACGcuaUCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 156020 0.7 0.858019
Target:  5'- uUAGGCCuGGGGCCU-CGGagggccUGGAGGGCu -3'
miRNA:   3'- cGUUUGG-UCUCGGAcGCU------AUCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 155967 0.67 0.957392
Target:  5'- cCGGGCgCAGGGCaagGCGAUGggcGAGGGa -3'
miRNA:   3'- cGUUUG-GUCUCGga-CGCUAU---CUCCCg -5'
29145 3' -53.2 NC_006146.1 + 155771 0.66 0.96777
Target:  5'- uGUAGACCccgccgcagaAGAGCCgcuCGGUGGcccugGGGGCc -3'
miRNA:   3'- -CGUUUGG----------UCUCGGac-GCUAUC-----UCCCG- -5'
29145 3' -53.2 NC_006146.1 + 155157 0.69 0.894418
Target:  5'- aGCGGGCCAGGGCCa-CGuugcuGGGCg -3'
miRNA:   3'- -CGUUUGGUCUCGGacGCuaucuCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.