miRNA display CGI


Results 1 - 20 of 317 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29149 3' -62.1 NC_006146.1 + 92073 0.66 0.700815
Target:  5'- gGGGCugCugCUGGGGGgcgGCCCGGCc---- -3'
miRNA:   3'- -UCCGugG--GACCCUC---UGGGCCGaaggg -5'
29149 3' -62.1 NC_006146.1 + 78831 0.66 0.700815
Target:  5'- cAGGCAgCCguguccggGGGAGAgaacUCCGGCagacUCCg -3'
miRNA:   3'- -UCCGUgGGa-------CCCUCU----GGGCCGa---AGGg -5'
29149 3' -62.1 NC_006146.1 + 54730 0.66 0.700815
Target:  5'- aGGGCGgCCgagGGGAGACUCaGGUcgCUg -3'
miRNA:   3'- -UCCGUgGGa--CCCUCUGGG-CCGaaGGg -5'
29149 3' -62.1 NC_006146.1 + 137721 0.66 0.699858
Target:  5'- gGGGUGCCC-GGGccuACCCGGUUcuggagcUCCUg -3'
miRNA:   3'- -UCCGUGGGaCCCuc-UGGGCCGA-------AGGG- -5'
29149 3' -62.1 NC_006146.1 + 105789 0.66 0.697944
Target:  5'- aGGGCACCCaGGGcucccagacgggaaAGAacaCCCaGGggUCCCc -3'
miRNA:   3'- -UCCGUGGGaCCC--------------UCU---GGG-CCgaAGGG- -5'
29149 3' -62.1 NC_006146.1 + 161740 0.66 0.691228
Target:  5'- uGGCACggUGGGAG-CCCGcCgUCCCc -3'
miRNA:   3'- uCCGUGggACCCUCuGGGCcGaAGGG- -5'
29149 3' -62.1 NC_006146.1 + 170525 0.66 0.691228
Target:  5'- cGGGCGgggCCUGaGGGGGCgCGGCgauugUCgCCg -3'
miRNA:   3'- -UCCGUg--GGAC-CCUCUGgGCCGa----AG-GG- -5'
29149 3' -62.1 NC_006146.1 + 108586 0.66 0.691228
Target:  5'- cGGCACCCccgGGGAG-CCgGagauaGCUUucaCCCa -3'
miRNA:   3'- uCCGUGGGa--CCCUCuGGgC-----CGAA---GGG- -5'
29149 3' -62.1 NC_006146.1 + 122267 0.66 0.691228
Target:  5'- uGGGCACCCgcccGGAGcccGCCCccacGGCa-CCCg -3'
miRNA:   3'- -UCCGUGGGac--CCUC---UGGG----CCGaaGGG- -5'
29149 3' -62.1 NC_006146.1 + 127562 0.66 0.691228
Target:  5'- cGGGCugcgccugcugGCCCUGGGcGGCCgaGGCcgCgCCg -3'
miRNA:   3'- -UCCG-----------UGGGACCCuCUGGg-CCGaaG-GG- -5'
29149 3' -62.1 NC_006146.1 + 141880 0.66 0.691228
Target:  5'- gAGGCugC-UGGG-GACCagGGCcUCCUg -3'
miRNA:   3'- -UCCGugGgACCCuCUGGg-CCGaAGGG- -5'
29149 3' -62.1 NC_006146.1 + 157270 0.66 0.691228
Target:  5'- gAGGCugC-UGGG-GACCagGGCcUCCUg -3'
miRNA:   3'- -UCCGugGgACCCuCUGGg-CCGaAGGG- -5'
29149 3' -62.1 NC_006146.1 + 154192 0.66 0.691228
Target:  5'- gAGGCugC-UGGG-GACCagGGCcUCCUg -3'
miRNA:   3'- -UCCGugGgACCCuCUGGg-CCGaAGGG- -5'
29149 3' -62.1 NC_006146.1 + 151114 0.66 0.691228
Target:  5'- gAGGCugC-UGGG-GACCagGGCcUCCUg -3'
miRNA:   3'- -UCCGugGgACCCuCUGGg-CCGaAGGG- -5'
29149 3' -62.1 NC_006146.1 + 148036 0.66 0.691228
Target:  5'- gAGGCugC-UGGG-GACCagGGCcUCCUg -3'
miRNA:   3'- -UCCGugGgACCCuCUGGg-CCGaAGGG- -5'
29149 3' -62.1 NC_006146.1 + 144958 0.66 0.691228
Target:  5'- gAGGCugC-UGGG-GACCagGGCcUCCUg -3'
miRNA:   3'- -UCCGugGgACCCuCUGGg-CCGaAGGG- -5'
29149 3' -62.1 NC_006146.1 + 62945 0.66 0.691228
Target:  5'- cAGG-GCCCUGGaGGuCUCGGCUgucuucaugUCCCc -3'
miRNA:   3'- -UCCgUGGGACCcUCuGGGCCGA---------AGGG- -5'
29149 3' -62.1 NC_006146.1 + 47749 0.66 0.681596
Target:  5'- gGGGCugGCCCUGGG-GACggagagCGGCcucUUCUCg -3'
miRNA:   3'- -UCCG--UGGGACCCuCUGg-----GCCG---AAGGG- -5'
29149 3' -62.1 NC_006146.1 + 43276 0.66 0.681596
Target:  5'- aGGGCGgCCU-GGAGGUCCGGCaggugCCUa -3'
miRNA:   3'- -UCCGUgGGAcCCUCUGGGCCGaa---GGG- -5'
29149 3' -62.1 NC_006146.1 + 43826 0.66 0.681596
Target:  5'- --cCGCCCUGGcccuUUCGGCUUCCCg -3'
miRNA:   3'- uccGUGGGACCcucuGGGCCGAAGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.