miRNA display CGI


Results 1 - 20 of 308 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29150 3' -57.8 NC_006146.1 + 126684 0.66 0.882933
Target:  5'- gAGGAGaCGgucaCCAAGGcACCGCCCccGG-CUg -3'
miRNA:   3'- -UCCUC-GUa---GGUUCC-UGGUGGG--CCaGG- -5'
29150 3' -57.8 NC_006146.1 + 131461 0.66 0.882933
Target:  5'- gAGGAGCAgggCCca-GugCACCCaggugGGUCUg -3'
miRNA:   3'- -UCCUCGUa--GGuucCugGUGGG-----CCAGG- -5'
29150 3' -57.8 NC_006146.1 + 89689 0.66 0.882933
Target:  5'- aAGGGGC--CCGGGGaACgGCCUgggauacacgGGUCCg -3'
miRNA:   3'- -UCCUCGuaGGUUCC-UGgUGGG----------CCAGG- -5'
29150 3' -57.8 NC_006146.1 + 139199 0.66 0.882933
Target:  5'- aAGGGGCGguggcagCCGcGGucccCCACCCuucccuGGUCCc -3'
miRNA:   3'- -UCCUCGUa------GGUuCCu---GGUGGG------CCAGG- -5'
29150 3' -57.8 NC_006146.1 + 108983 0.66 0.882933
Target:  5'- uGGAGCccCUGAuGGcCCGCCgGGUCUu -3'
miRNA:   3'- uCCUCGuaGGUU-CCuGGUGGgCCAGG- -5'
29150 3' -57.8 NC_006146.1 + 33562 0.66 0.882933
Target:  5'- uGGuGCuccUCCGGGGgucGCCGCguucgCUGGUCCg -3'
miRNA:   3'- uCCuCGu--AGGUUCC---UGGUG-----GGCCAGG- -5'
29150 3' -57.8 NC_006146.1 + 70676 0.66 0.882933
Target:  5'- cGGGAGgugaugaucacuCAggCCAcGGGCCGCCUGGUg- -3'
miRNA:   3'- -UCCUC------------GUa-GGUuCCUGGUGGGCCAgg -5'
29150 3' -57.8 NC_006146.1 + 3725 0.66 0.882933
Target:  5'- cAGG-GUcUCUggGGGCCGCgUGGcCCu -3'
miRNA:   3'- -UCCuCGuAGGuuCCUGGUGgGCCaGG- -5'
29150 3' -57.8 NC_006146.1 + 123627 0.66 0.882933
Target:  5'- cAGGA-CGUUCugcAGGACCucgucACCCGGgCCa -3'
miRNA:   3'- -UCCUcGUAGGu--UCCUGG-----UGGGCCaGG- -5'
29150 3' -57.8 NC_006146.1 + 103089 0.66 0.882933
Target:  5'- cGGAGCuguuuacuUCCGaggcGGGGCagaGCCUGG-CCg -3'
miRNA:   3'- uCCUCGu-------AGGU----UCCUGg--UGGGCCaGG- -5'
29150 3' -57.8 NC_006146.1 + 9009 0.66 0.882933
Target:  5'- cGGGGCGUugcCCAaaAGGGaaGCCgGGUCUc -3'
miRNA:   3'- uCCUCGUA---GGU--UCCUggUGGgCCAGG- -5'
29150 3' -57.8 NC_006146.1 + 123697 0.66 0.882933
Target:  5'- cGGAgGCggCCAGGGGCCuggcGCUCGGg-- -3'
miRNA:   3'- uCCU-CGuaGGUUCCUGG----UGGGCCagg -5'
29150 3' -57.8 NC_006146.1 + 3016 0.66 0.876005
Target:  5'- -cGAGgGUCCccGGGCCGcCCCGGggcUCCc -3'
miRNA:   3'- ucCUCgUAGGuuCCUGGU-GGGCC---AGG- -5'
29150 3' -57.8 NC_006146.1 + 115971 0.66 0.876005
Target:  5'- -cGGGCAgacgUCGAGGccuaCugCCGGUCCc -3'
miRNA:   3'- ucCUCGUa---GGUUCCug--GugGGCCAGG- -5'
29150 3' -57.8 NC_006146.1 + 54053 0.66 0.876005
Target:  5'- cGGcGGUggUCAGGGcCCACCUGG-CCg -3'
miRNA:   3'- uCC-UCGuaGGUUCCuGGUGGGCCaGG- -5'
29150 3' -57.8 NC_006146.1 + 42835 0.66 0.876005
Target:  5'- cAGGAuCAgggCCucGAGGGCCGCCaGGcCCa -3'
miRNA:   3'- -UCCUcGUa--GG--UUCCUGGUGGgCCaGG- -5'
29150 3' -57.8 NC_006146.1 + 101633 0.66 0.876005
Target:  5'- uGGGccagcuGCAUCUucgagGAGGACCcggACCUGGcCCu -3'
miRNA:   3'- -UCCu-----CGUAGG-----UUCCUGG---UGGGCCaGG- -5'
29150 3' -57.8 NC_006146.1 + 40850 0.66 0.876005
Target:  5'- aGGGGGCGcUCUugGAGGcCCGgcuCgCGGUCCg -3'
miRNA:   3'- -UCCUCGU-AGG--UUCCuGGU---GgGCCAGG- -5'
29150 3' -57.8 NC_006146.1 + 2084 0.66 0.876005
Target:  5'- -cGAGgGUCCccGGGCCGcCCCGGggcUCCc -3'
miRNA:   3'- ucCUCgUAGGuuCCUGGU-GGGCC---AGG- -5'
29150 3' -57.8 NC_006146.1 + 1152 0.66 0.876005
Target:  5'- -cGAGgGUCCccGGGCCGcCCCGGggcUCCc -3'
miRNA:   3'- ucCUCgUAGGuuCCUGGU-GGGCC---AGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.