miRNA display CGI


Results 1 - 20 of 163 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29151 5' -49.7 NC_006146.1 + 116766 0.65 0.998811
Target:  5'- aGggGGGCCgcuacuacuccACGGACCuGCa -3'
miRNA:   3'- -CuuCCUGGaacucauu---UGCCUGGuCG- -5'
29151 5' -49.7 NC_006146.1 + 105865 0.66 0.998587
Target:  5'- cGAGGaaGCCgggGAGgcaagauAGCGG-CCAGCg -3'
miRNA:   3'- cUUCC--UGGaa-CUCau-----UUGCCuGGUCG- -5'
29151 5' -49.7 NC_006146.1 + 137405 0.66 0.998587
Target:  5'- gGAGGGugCUgGGGUcccGgGGACCAcGCc -3'
miRNA:   3'- -CUUCCugGAaCUCAuu-UgCCUGGU-CG- -5'
29151 5' -49.7 NC_006146.1 + 90088 0.66 0.998587
Target:  5'- gGggGGAgCagugGAGgcAGCGGAgCAGg -3'
miRNA:   3'- -CuuCCUgGaa--CUCauUUGCCUgGUCg -5'
29151 5' -49.7 NC_006146.1 + 15806 0.66 0.998297
Target:  5'- -uGGGGCC---AGcAAGCGaGACCAGCc -3'
miRNA:   3'- cuUCCUGGaacUCaUUUGC-CUGGUCG- -5'
29151 5' -49.7 NC_006146.1 + 18884 0.66 0.998297
Target:  5'- -uGGGGCC---AGcAAGCGaGACCAGCc -3'
miRNA:   3'- cuUCCUGGaacUCaUUUGC-CUGGUCG- -5'
29151 5' -49.7 NC_006146.1 + 21961 0.66 0.998297
Target:  5'- -uGGGGCC---AGcAAGCGaGACCAGCc -3'
miRNA:   3'- cuUCCUGGaacUCaUUUGC-CUGGUCG- -5'
29151 5' -49.7 NC_006146.1 + 127087 0.66 0.998297
Target:  5'- aAAGGGCCagggcgGAGcGGugGGACaGGCa -3'
miRNA:   3'- cUUCCUGGaa----CUCaUUugCCUGgUCG- -5'
29151 5' -49.7 NC_006146.1 + 12727 0.66 0.998297
Target:  5'- -uGGGGCC---AGcAAGCGaGACCAGCc -3'
miRNA:   3'- cuUCCUGGaacUCaUUUGC-CUGGUCG- -5'
29151 5' -49.7 NC_006146.1 + 25039 0.66 0.998297
Target:  5'- -uGGGGCC---AGcAAGCGaGACCAGCc -3'
miRNA:   3'- cuUCCUGGaacUCaUUUGC-CUGGUCG- -5'
29151 5' -49.7 NC_006146.1 + 28117 0.66 0.998297
Target:  5'- -uGGGGCC---AGcAAGCGaGACCAGCc -3'
miRNA:   3'- cuUCCUGGaacUCaUUUGC-CUGGUCG- -5'
29151 5' -49.7 NC_006146.1 + 46633 0.66 0.998297
Target:  5'- -cAGGGCCUUGGGggccgAGACGuACUcccugAGCa -3'
miRNA:   3'- cuUCCUGGAACUCa----UUUGCcUGG-----UCG- -5'
29151 5' -49.7 NC_006146.1 + 130657 0.66 0.998297
Target:  5'- aGGAGGuucaGCCUcGcGUAGGCGGACgGuGCa -3'
miRNA:   3'- -CUUCC----UGGAaCuCAUUUGCCUGgU-CG- -5'
29151 5' -49.7 NC_006146.1 + 52971 0.66 0.998297
Target:  5'- aGAAGG-CCgguAGUGcgcaGGCGGACCuGCc -3'
miRNA:   3'- -CUUCCuGGaacUCAU----UUGCCUGGuCG- -5'
29151 5' -49.7 NC_006146.1 + 128097 0.66 0.998297
Target:  5'- gGAGGGGCC--GAGgcAGgGGACaauGGCg -3'
miRNA:   3'- -CUUCCUGGaaCUCauUUgCCUGg--UCG- -5'
29151 5' -49.7 NC_006146.1 + 167876 0.66 0.998297
Target:  5'- cGGAGGugCggUGAGguugcuccagGGAUGGAaaggccCCAGCa -3'
miRNA:   3'- -CUUCCugGa-ACUCa---------UUUGCCU------GGUCG- -5'
29151 5' -49.7 NC_006146.1 + 60473 0.66 0.997958
Target:  5'- cGGGGAgCggUGAG-AGGCcgggGGGCCAGCu -3'
miRNA:   3'- cUUCCUgGa-ACUCaUUUG----CCUGGUCG- -5'
29151 5' -49.7 NC_006146.1 + 41286 0.66 0.997958
Target:  5'- cGGAGGACCc---GgcGACGGAgaCGGCg -3'
miRNA:   3'- -CUUCCUGGaacuCauUUGCCUg-GUCG- -5'
29151 5' -49.7 NC_006146.1 + 81210 0.66 0.997958
Target:  5'- -uGGGACUUUGcccaaGGUGAagccauccaaGCGaGGCCGGCc -3'
miRNA:   3'- cuUCCUGGAAC-----UCAUU----------UGC-CUGGUCG- -5'
29151 5' -49.7 NC_006146.1 + 32141 0.66 0.997565
Target:  5'- cGGGGugCUgGGGUGgggGAUGGGCUcaGGCa -3'
miRNA:   3'- cUUCCugGAaCUCAU---UUGCCUGG--UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.