miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29152 3' -58.5 NC_006146.1 + 153985 0.66 0.860719
Target:  5'- -----cCGGGGUcccuccggccgGCCU-GAUGGACCCg -3'
miRNA:   3'- cuacuaGCCCCA-----------CGGGuCUGCCUGGG- -5'
29152 3' -58.5 NC_006146.1 + 83638 0.66 0.860719
Target:  5'- uGGUGG-CGGGG-GCUCu-GCGGGCCa -3'
miRNA:   3'- -CUACUaGCCCCaCGGGucUGCCUGGg -5'
29152 3' -58.5 NC_006146.1 + 13122 0.66 0.860719
Target:  5'- uGUGGaCGGGG-GCUCc--CGGGCCCa -3'
miRNA:   3'- cUACUaGCCCCaCGGGucuGCCUGGG- -5'
29152 3' -58.5 NC_006146.1 + 50179 0.66 0.860719
Target:  5'- --cGAUgGGGGUGaucuCCCGGAUcaGGugCUg -3'
miRNA:   3'- cuaCUAgCCCCAC----GGGUCUG--CCugGG- -5'
29152 3' -58.5 NC_006146.1 + 43632 0.66 0.860719
Target:  5'- aGUGGgcggCGGGGcguggccGCCUggggAGAgGGGCCCg -3'
miRNA:   3'- cUACUa---GCCCCa------CGGG----UCUgCCUGGG- -5'
29152 3' -58.5 NC_006146.1 + 141674 0.66 0.860719
Target:  5'- -----cCGGGGUcccuccggccgGCCU-GAUGGACCCg -3'
miRNA:   3'- cuacuaGCCCCA-----------CGGGuCUGCCUGGG- -5'
29152 3' -58.5 NC_006146.1 + 144751 0.66 0.860719
Target:  5'- -----cCGGGGUcccuccggccgGCCU-GAUGGACCCg -3'
miRNA:   3'- cuacuaGCCCCA-----------CGGGuCUGCCUGGG- -5'
29152 3' -58.5 NC_006146.1 + 147829 0.66 0.860719
Target:  5'- -----cCGGGGUcccuccggccgGCCU-GAUGGACCCg -3'
miRNA:   3'- cuacuaGCCCCA-----------CGGGuCUGCCUGGG- -5'
29152 3' -58.5 NC_006146.1 + 150907 0.66 0.860719
Target:  5'- -----cCGGGGUcccuccggccgGCCU-GAUGGACCCg -3'
miRNA:   3'- cuacuaGCCCCA-----------CGGGuCUGCCUGGG- -5'
29152 3' -58.5 NC_006146.1 + 157063 0.66 0.860719
Target:  5'- -----cCGGGGUcccuccggccgGCCU-GAUGGACCCg -3'
miRNA:   3'- cuacuaGCCCCA-----------CGGGuCUGCCUGGG- -5'
29152 3' -58.5 NC_006146.1 + 167066 0.66 0.859978
Target:  5'- --aGGUCcgguagggcagcgGGGGUGCCCcgccuGGCcuGACCCa -3'
miRNA:   3'- cuaCUAG-------------CCCCACGGGu----CUGc-CUGGG- -5'
29152 3' -58.5 NC_006146.1 + 14113 0.66 0.85322
Target:  5'- gGAUG-UCGGGGcUGCUgGcGGCGG-CCUa -3'
miRNA:   3'- -CUACuAGCCCC-ACGGgU-CUGCCuGGG- -5'
29152 3' -58.5 NC_006146.1 + 51563 0.66 0.845533
Target:  5'- uGAUGAcccUGGGcGccGCCgGGAgGGGCCCg -3'
miRNA:   3'- -CUACUa--GCCC-Ca-CGGgUCUgCCUGGG- -5'
29152 3' -58.5 NC_006146.1 + 157466 0.66 0.845533
Target:  5'- aAUGGUcaCGGGcagcGUGaugaCCGGGCGGGCCUu -3'
miRNA:   3'- cUACUA--GCCC----CACg---GGUCUGCCUGGG- -5'
29152 3' -58.5 NC_006146.1 + 113641 0.66 0.837664
Target:  5'- cGGUGcucCGGGGgaugGCCUugcuGAccaCGGGCCCg -3'
miRNA:   3'- -CUACua-GCCCCa---CGGGu---CU---GCCUGGG- -5'
29152 3' -58.5 NC_006146.1 + 137856 0.66 0.837664
Target:  5'- gGGUGggUGGGcGUGuCCCGGGCcccgccccGGGCCg -3'
miRNA:   3'- -CUACuaGCCC-CAC-GGGUCUG--------CCUGGg -5'
29152 3' -58.5 NC_006146.1 + 154887 0.66 0.837664
Target:  5'- ---cGUCGGGGggcagggccucGCCCGGGCuGACCg -3'
miRNA:   3'- cuacUAGCCCCa----------CGGGUCUGcCUGGg -5'
29152 3' -58.5 NC_006146.1 + 128512 0.66 0.82962
Target:  5'- ---cGUCGGGGUgGCCCugGGGCGccccucGCCCa -3'
miRNA:   3'- cuacUAGCCCCA-CGGG--UCUGCc-----UGGG- -5'
29152 3' -58.5 NC_006146.1 + 106290 0.66 0.82962
Target:  5'- -uUGcUCGGGuGUGUCCuGACaGGCCUc -3'
miRNA:   3'- cuACuAGCCC-CACGGGuCUGcCUGGG- -5'
29152 3' -58.5 NC_006146.1 + 161763 0.67 0.821406
Target:  5'- --aGGUCcgagGGGGcGCCUGGGCGGggGCCUg -3'
miRNA:   3'- cuaCUAG----CCCCaCGGGUCUGCC--UGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.